Ictalurus punctatus (channel catfish): 108259869
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Entry
108259869 CDS
T04658
Name
(RefSeq) nuclear receptor corepressor 1 isoform X3
KO
K04650
nuclear receptor co-repressor 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
108259869
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ipu01009
]
108259869
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
108259869
Protein phosphatases and associated proteins [BR:
ipu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108259869
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
SMART complex
108259869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GPS2_interact
Myb_DNA-binding
Myb_DNA-bind_6
Cytomega_UL84
Motif
Other DBs
NCBI-GeneID:
108259869
NCBI-ProteinID:
XP_017315098
Ensembl:
ENSIPUG00000013781
UniProt:
A0A2D0Q8S5
LinkDB
All DBs
Position
28:14056907..14138599
Genome browser
AA seq
2466 aa
AA seq
DB search
MSSSGFPPSQGSFSSEQSRYPPHSVQYTFSPARHPPEFTVSEYRNAHLQDQQQRRRPSLL
SEFHPGTERSHTRMHSTLHDPMPPERRHGYEQQFHTVTAQLEHEAMDAKRPRIEGANEAH
LARAPPASVVLPLLNPMQDGLRTPGEIKKENQFSVKLEASSPGGGIQAMGEEQDASPSKL
SKEELIQSMDRVDREIAKVEQQIFKLKKKQQQLEEEAAKPVEPEKPVSPPPVEHKHRSIV
QIIYDENRKKAEEAHKIFEGLGPKVELPLYNQPSDTKVYHDNIKTNQVMRKKLILFFKRR
NHARKQREQKICQRYDQLMEAWEKKVERMENNPRRKAKESRTREYYERQFPEIRKQREQQ
ERFQRVGQRGTGLSATIARSEHEISEIIDGLSEQEIFLDVASETRGSPSQAAGAASTQKA
SQSAKKYLKHCNGNNKNNEKQMRQLSVIPPMMYDSEQRRVKFINMNGLMDDPMKVYKSRQ
FMNVWTEHEKEIFREKFVQHPKNFGLIASYLERKCVSDCVLYYYLTKKSQNYKTLVRRNY
GSRRRRNQQITRTSQEEKSDEKNEEDKLEKSDKKEEDDKKDEEEKDEKEDSKDISKDKEK
CEGEDEEGKEQNTPRGRKTANSQGRRKGRITTRSMANEAASTATEEPAAPAAPPPPPPPE
PVLPEPVPPSKPESAPKPARELAKLAPVTSMDSQARGAVEAGETSRWTEEEMEVAKKGLV
EHGRNWSAIAKMVGTKSEAQCKNFYFNYKRRHNLDDLLPQPKQANKCSRDRDASQSDGVA
TASADDDDEEENPDDSEGAENSSDTESAASPSRSDTPKPSESQPQAPDQEATAPKVPNAD
TKAQEPTFNELQVKLEKSPEGAVVDESMFKDEVQLYPKSEPQDTETAGGDRGEVQVKTEP
ELREKEKQNEQQHSDNDSSATCSADEDVEDEPDRQRLFSLEKPSILGGSGSVVVSSSKQA
QLSMQQLQQRAATIPPMVSLPSSLLHYPSSSAPLARPRDWERLRHRAPPRHVAGPFGTAG
VPVGAPLSGLTMFQHQIKAVHESAHMEDNQRQEAGELERRPRYITRSPTILDRDGKPFPY
MAYDIKLMEPEVPAAGRPGSPYRLSPREPSKASPQPEPNNPARYSVPPVLQPAPNQVVQN
LPDGMRVPFARHRPPNIPSPPPLIPTSKPSDKPTFIQGGSILQGTPGTYLPSHTHVMFGP
EGAKSAGGSISLGLPRPQDPAKPVSYIKQEECSPRGQSAQAEGLLSRAQYEGVVRGGPMP
TIQELGRGPTGKGPEGLPIRAGSITHGTPALPQSSIPAELLKGKLSAEDLSSPEKGRGEP
LPKAHVIYEGKSGHILSYDAIKNTREGTRSPRTGHELKRTYEMMEGARGLSGREAAPFEG
LISRALPRDGQHPDSKERPILMGSIMQGTPRTAADAFDEVKYGKQIKRESPPIRSFEGGI
TKGKPYEGVNTIKEMGRSIHEIPRKEVPDSRKTPGLEGSITQGIPLKYESSSSGASQSAI
KHNVKSLLTSPGKLEEPKVQERVRHTSVVSSTSVLRSTHQEASKAQLSPGMYEDANARRT
PNYTTSSISRGSPLLRAQEGGITAGKPVSHERKSTLTPTQRDSVPAKSPVSGSEPLSSHS
PFDPHQVYRAHLGPHLDPSLFHHPAYMFQRQPSPTGYPNTYQLYTMENTRQTILNDYITS
QKMQPIPRAEVARGLSPREQQIAIPYPAGARGIIDLAQMPPTILLPHPGGTGSPNLDHIA
YRPGPQTPFPPRVFNPASISPGHPAHLAASMERERERERERERERDREHREREKEKERER
ERERERERERERMVVANEYIRGAAPEQPGRPSSRAFLRSPSPSMRSQEGVVQQRPSIFQG
TKSVITPLIRQMPPAAAAAQTSSRYNTAADALAALVDAAASAPQMDVAKVKEAKHEGISA
RDEEASPSRAMSLPAGKAPLPGYPDGGGGGGATSGKDKSRIEEELRTLGKTTITAASFID
VIITRQISSEKDSRERGSQSSDSSGSLTSSRYDGQSSGAIEVISPASSPAQREEKNERSF
SSEKSTQPATGTVRGFDIGRFRHQMESGPSTAPAPPTQTHRVMTLADHISHIITQDFAKN
QDPPPSSSASSSSSSLSSTFQNSAAVGGSARSKVPNRYSPENPVNPAHHQKQPSRVSPEN
ASDKSRSRPGKSPERAGGRAVESYEPISPPQNYSGLEKQENSLLQSQRREQDLTEQRTDS
RSPGSGNYLPAFFTKLESTSPMVMSKKQEIIRKSDVGNAQPGTEIFNLPAVTTSSNVNLR
NHSFSDPASNLGLEDIIRKALMGSVDERPEEQTHQAQSVASAAGNNSEGRQEANPSPSTG
RYSAKQKLQSKASSRKSKSPNPGQAYAGGERPSSVSSVHSEGEYHRQAPSWAWEDRPSSA
GPMQFPYNPLTMRMLSSTPPTSMACPSPSMQSQQQPGGGANAPARAWEREPPLLSEQYET
LSDSDD
NT seq
7401 nt
NT seq
+upstream
nt +downstream
nt
atgtctagctcgggcttcccccccagtcaggggagtttcagcagcgagcagagccgctat
ccaccccactcagtacagtacaccttcagtcctgcacgccatccaccggagttcacagtt
tcagagtaccgtaatgctcacctgcaggaccagcagcagcgtcgcaggccctcattactg
tccgaattccaccctggaaccgagaggtctcacacacgcatgcactctacattgcatgat
ccaatgcctccggagcgccggcacggctatgagcagcagttccacaccgtcactgcccag
ctggagcacgaggccatggatgccaagcgtcctcgcattgagggcgccaatgaagcccac
ctggcccgcgcaccacccgccagcgtcgtcctgccgctactaaaccccatgcaggacggc
ctgagaaccccaggagagatcaagaaggagaatcagttcagtgtgaagctagaggcctca
tccccaggaggagggattcaggccatgggggaggagcaggacgcatctccttctaagctc
tccaaagaggagctaatccagagcatggaccgtgtggaccgtgagattgccaaggttgag
caacagatatttaaactcaagaagaagcagcaacaactggaggaggaagcagcaaagccg
gtggagccggaaaagccagtgtctcctccccccgtggagcacaaacaccgcagcattgtc
cagatcatctacgatgagaaccggaaaaaagcagaggaggcccacaagatcttcgaagga
ctcggccctaaagtagagctgcccctgtataaccagccgtcagacactaaagtgtaccac
gacaacattaagacaaatcaagtgatgaggaagaagctgattctgtttttcaagaggagg
aaccacgcacgcaaacagagggaacagaaaatctgccagcgctacgaccagctgatggag
gcgtgggagaagaaggtggagcggatggagaacaacccacggcgcaaggccaaggagagt
cgcacgcgcgagtactacgagcgccaattccccgagatccgcaagcagcgcgaacagcag
gagcgcttccaaagggtgggacagagaggcacggggctgtctgccaccatagctaggagc
gagcacgagatctcggaaatcatagacggcctctctgaacaagagattttcttagatgtg
gcctcggagactcgtgggagtccgtcacaggctgcaggagcagcgtctacccagaaagct
tcacagtcagcaaaaaaatacttgaagcactgtaacggaaacaataaaaacaacgagaag
cagatgaggcagctatccgtcatccctcccatgatgtatgactcggagcagaggcgcgtg
aagttcatcaacatgaacggacttatggacgaccccatgaaggtctacaagtctcggcag
ttcatgaacgtctggaccgagcacgagaaggagatttttcgggagaagtttgtgcagcac
ccaaagaactttggccttattgcctcttatcttgaacgaaagtgtgtctcagattgtgta
ctgtattactacttgaccaagaagagccagaactataagacactggttcgacgcaactat
ggcagccgacgacggaggaaccagcagataacgcggacctcacaagaagaaaagtctgac
gagaagaacgaggaggacaagttggagaaatcggacaagaaagaggaagacgataagaag
gacgaggaggagaaagatgaaaaagaggactcgaaggacattagcaaagacaaagagaag
tgtgagggagaggacgaggaggggaaggagcagaacacgccccgcggtcgcaagacggct
aacagccagggacggcgtaagggccgaatcaccacgcgctccatggccaacgaggctgct
agtactgccacagaggaaccagcagcaccagcagcacccccgccaccaccaccacctgaa
cctgttttaccggagcctgtccctccttccaagccagagtcagcgccgaagccagcacgc
gaactcgctaagcttgctcctgtgaccagcatggacagccaagcacgaggagctgtagag
gccggagagacgtctcgctggacagaggaggagatggaggtggccaaaaaaggactggta
gagcacggcaggaactggtcggctatcgctaaaatggtgggcaccaagagtgaggcgcag
tgcaagaacttctacttcaactacaagaggcggcacaacctggacgacctgctgcctcaa
cccaaacaggcaaacaaatgttcgcgtgaccgagatgcgtctcagagcgacggtgtggcc
acggcttcggctgatgatgatgatgaggaggagaacccagatgacagcgaaggtgcagag
aacagttcagacacagagagcgcggcatctccttcacggtcggacacacccaagccctcc
gagtcgcaaccccaagccccggatcaagaagctactgcccccaaagtccctaatgcagat
accaaagctcaggagcccaccttcaacgagctgcaggtaaagctggagaaaagtccagaa
ggagcagtggtggacgaatccatgtttaaggatgaggtccagctgtaccctaagagcgaa
cctcaggacacagaaacagcgggaggagaccggggagaggtgcaagtaaagaccgagcca
gaattgagggagaaagagaagcagaacgagcagcagcattcggacaatgactcaagtgcc
acctgcagtgctgatgaagatgtcgaggacgagccagacagacagaggttgttctctctg
gagaagccgtcgattctcggaggctctgggtcagtggtggtctcctcgagcaagcaggct
cagctcagtatgcagcagctccagcagcgtgctgccaccatcccccccatggtcagtctc
cctagttccctccttcactaccctagcagctctgcccccctggccaggcccagggactgg
gagaggctccgtcacagagccccaccccgccacgttgctggtccgtttgggacggctggg
gttcctgtaggagctcctctgagtggcttaaccatgttccagcaccaaatcaaagctgta
cacgaatcggcacacatggaggacaaccagagacaagaagccggagagttggagcgcagg
ccgcgctacatcactcgcagccccaccatcctcgaccgagatggtaagccgtttccctac
atggcgtacgatataaagctgatggagccagaggttcctgctgcaggaagaccgggttca
ccgtacagactgtctccccgagagcctagcaaagcgtcgccccaacccgagcccaacaac
cccgcccgctacagcgtcccgccagtcctgcagcccgcgcctaaccaggtggtccagaac
cttccagatggaatgcgtgtgccattcgcccgccacaggccccccaacattccgtccccg
cctccactcatccctacgtccaaaccctcggacaagcccaccttcatccagggaggatcc
attttacagggaacgccgggcacgtatctgccctcacacactcatgtcatgttcgggcca
gagggagctaagagcgctggtggatccatctctctcggcctgccaagaccacaggaccct
gccaaacctgtgtcctatataaagcaggaggaatgttcaccgcgtgggcaaagtgctcag
gctgaagggctgctctccagggcacagtatgaaggagtagtccgaggagggccgatgcct
accatccaggaactgggaagagggcctactggaaaaggccctgagggacttcccataaga
gcaggatcaatcacccatggcaccccagctcttcctcagtccagcataccggcagaattg
ctgaagggcaagctgagtgctgaggacctgagtagcccagagaagggccgaggcgaacca
ctgcctaaagcccatgtcatttatgagggcaagagtggccacatcctgtcatatgatgcc
attaagaacaccagagaaggtacaagaagccccaggacaggacatgagttgaaacgcaca
tacgagatgatggagggagccagaggactttctggacgggaggctgcaccttttgaaggt
ttgattagcagggcactgccaagagatggccaacaccctgactccaaggagaggcccata
ctcatgggatccatcatgcaagggacaccccgaaccgccgctgatgcttttgacgaggtc
aagtatggtaagcagatcaagagggaaagtccaccaattcgctcctttgaaggaggaatc
actaagggcaagccctacgagggtgtgaacaccattaaagagatgggacgctccattcat
gagatcccacgcaaggaagtaccggacagccgcaagacccctggcttggaaggatccatt
actcaaggcatccctctgaagtatgagagcagcagcagtggcgccagccagtctgccatc
aagcacaatgttaagtcacttctcaccagcccgggcaagctggaggaacccaaagtacaa
gagcgcgtgcggcacacgtcagtcgtcagctccacgtcagtgctgcgctccacacaccaa
gaggccagcaaggctcagctcagcccggggatgtacgaggacgcgaatgcccgcaggacc
cccaactacaccaccagctccatctccagaggatcgcccctgcttcgggcgcaagagggg
ggtataactgcaggaaagcccgtgtcccacgagagaaagagcacgctgaccccaacccag
agagacagcgtcccagccaagtctcctgtatctggaagcgagccgctgtcctctcacagc
ccctttgacccccatcaggtctaccgagcccacctgggccctcatttggaccccagcctt
ttccaccacccagcttacatgttccagaggcagccatcccctactggctaccccaacacc
taccaactgtacaccatggagaacacgcgccagacaatcctgaatgactacatcacctcg
cagaaaatgcagcccatcccgcgggccgaagtcgccagaggcctgtcgcccagagaacag
cagattgccatcccataccctgctggagccagaggtataattgatctagcccagatgcct
cccaccatcctgttgcctcaccctggggggacaggttcccctaacttggaccacatcgca
taccgccctggacctcagaccccttttcctcctagggttttcaacccagcctccatatct
ccaggacaccctgcacatctcgcagccagcatggagagagagagagaaagggaaagggaa
cgagagagggagagggatcgcgaacaccgtgaacgggagaaagagaaggagcgagagagg
gagagagagcgggagcgagagagggaacgcgagcgcatggtagtcgctaacgagtacatc
cgtggggcagctccagagcagcctggcaggcccagtagccgtgctttcctgcgttccccg
tctccttcaatgaggtcccaggagggtgtagtccagcagaggcccagcatcttccagggc
acgaagagtgtcatcacgcctcttatcaggcagatgccccccgcagcagccgcagcacag
acttcctcccgctacaacacagccgcagatgcactggctgcactggtggatgccgctgcc
tctgcaccccagatggacgtagcgaaggtcaaagaggctaaacacgagggcatcagcgcc
cgcgacgaagaggcgagcccctcacgagccatgtcacttcctgctgggaaagcacccctt
cctggatatccagacggaggaggaggaggaggggcaacaagcggcaaagataagtcccgc
atagaggaagagctgcgtacgctcggcaagaccaccatcaccgcggccagcttcatcgac
gtcataatcactcgtcaaatttcatcagaaaaagactcgcgcgagaggggctcacagagc
tcggactcctcgggaagtttgacatcgagccgttatgatggacagagcagcggcgccatc
gaggtgatcagtccggcaagttccccggctcagagagaggagaaaaacgaacggtccttc
tcctcagagaagagcactcagccggctacaggtactgttagaggatttgatattgggcgc
ttcaggcatcagatggaatcgggaccctcaacagctccagctccacctacacaaactcac
cgtgtcatgaccctagctgaccacatctcgcacatcataacccaggactttgccaagaat
caggaccctcctccttcatccagcgcttcttcctcctcttcctccttatcctctacattc
caaaactctgcagcagtaggtggaagcgctcgctccaaagtgcctaaccgctacagtccg
gagaacccagtcaaccccgcccaccatcagaaacaacctagccgagtgtcccctgagaac
gcctcggacaaatccagatccaggccgggtaaatcccctgagcgtgctggcggccgggcc
gtcgagagctacgagcccatctcccctccacaaaactattcagggctagagaaacaagag
aacagtctgcttcagagccagaggcgtgaacaggatcttacagagcaaagaacggactcg
cgctccccgggcagcggcaactatctgcctgctttcttcaccaagctggagagcacctcc
cccatggtgatgtccaagaaacaggagatcatccgcaagtctgatgtcggtaatgcacag
ccaggcacagagatctttaatttaccagcagtaacaacctcaagtaatgtgaaccttcgg
aaccactcgttcagcgacccagccagcaaccttggtctagaggacataatccgtaaggct
ctgatggggtctgtagatgagagaccagaggagcagacacatcaagctcagtctgtagct
tcagcagcaggaaataactctgaggggcgacaggaggccaatccgtcccccagcacaggt
agatattcagcgaagcagaagctccagagcaaagccagtagcaggaagtccaagtcgccc
aacccaggccaggcgtacgcaggcggagagcgaccctcctccgtgtcctctgtacattcg
gaaggagaatatcaccggcaggctcccagctgggcttgggaagaccggccctcatccgca
ggtccaatgcagttcccttacaaccctctaacgatgcgcatgctcagcagcacgcctccc
acctccatggcctgcccttctccctccatgcagtcccagcagcagccaggaggaggagcc
aacgctccggcccgtgcctgggagagggagccgccgctgctctcggagcagtacgaaacc
ctctcggacagcgacgactga
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integrated database retrieval system
