Ictalurus punctatus (channel catfish): 108259890
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Entry
108259890 CDS
T04658
Name
(RefSeq) transcription factor Sox-9-A
KO
K18435
transcription factor SOX9 (SOX group E)
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108259890
Transcription factors [BR:
ipu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108259890
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
108259890
NCBI-ProteinID:
XP_017315164
Ensembl:
ENSIPUG00000011442
UniProt:
A0A2D0QA56
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Position
2:complement(22714492..22718914)
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AA seq
464 aa
AA seq
DB search
MNLLESYVKMTDEQDKCLSDAPSPSMSEDSVASPCPSGSSSDTENTRPPSENRLKKDEED
ESKFPVCIRDAVSQVLKGYDWTLVPMPVRVNGSGKNKPHVKRPMNAFMVWAQAARRKLAD
QYPHLHNAELSKTLGKLWRLLNEGEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKSG
QGETDDTEHTHISPNAIFKALQRADSPASSMGEVHSPGDHSGQSQGPPTPPTTPKTDVPS
VKPDLKREGRPLPEGTGRQLNIDFRDVDIGELSTDVISNMEAFDVNEFDQYLPTHGAQAY
SSSGYGMGQTAGTSGHGWMSKQQPQQQPQQHSLTSLGTAGEQGQAQQRPAHIKTEQLSPS
HYSEQSQGSPQHVAYGSFNLQHYTATTSTYPSIARSQYDYSDHQGSAASYYNQGSGLYST
FSYMSPAQRPMYTPVADASGVPNVPQTHSPHWEQQPVYTQLSRP
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcctcgagtcgtacgtgaagatgaccgacgagcaagacaaatgtctctccgac
gcgccgagtccgagcatgtcggaagactctgtagcttccccgtgtccgtccggttcgagc
tccgacaccgagaacacgcggccaccttccgagaatcggctcaagaaggacgaagaggat
gaaagcaagttccctgtgtgcatccgcgacgccgtgtcacaggtgctgaaaggctacgac
tggacgcttgtgcccatgccggtgcgcgtgaacggttcggggaagaacaagccgcacgtg
aagcggcccatgaacgcgtttatggtgtgggcgcaagcggcgcgcagaaagctggctgat
cagtaccctcaccttcataacgccgaactcagcaaaacccttggcaaactctggcggctg
ctgaatgaaggggagaagcggccgtttgtggaggaggctgagagattgcgggtacagcat
aagaaagatcatccagactacaaataccagccacggcggcggaagagtgtgaagagcggc
cagggagaaaccgatgataccgagcacacacacatttcccccaacgccatctttaaagca
ctacagagagccgactctcctgcgtccagtatgggtgaggtacactctcccggagaccac
tcaggtcagtctcagggccctccaactccccccacgactcccaaaacagatgttccgagt
gtgaaaccggacctgaagcgagagggacgtccacttcccgagggaacaggccgccagctc
aacattgacttccgtgatgtggacatcggtgagctgagcactgatgtcatctccaacatg
gaggcattcgatgtgaacgagtttgaccagtacttgccaactcatggggcccaggcctac
tcctcatctgggtatggtatgggccagacggcaggaaccagcgggcatggctggatgagc
aaacagcagccacagcagcagcctcagcaacactctctgacctcgcttggcacagctggc
gagcagggtcaggcccagcagcgtccagcacacattaagacagagcagctcagcccgagc
cactacagtgagcagagccagggttcaccccagcatgtggcatacggttcgttcaaccta
cagcattacactgccaccacctccacgtacccatccattgcgcgcagtcagtatgattac
agcgaccaccagggcagtgctgcctcttactacaaccagggttcaggcctctactccaca
tttagctacatgagtcctgcccagagacccatgtacactcctgtcgctgatgctagtggt
gttccaaatgtgcctcagacccacagtccccattgggaacagcaaccagtatatacacag
ctttcccggccttaa
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