Ictalurus punctatus (channel catfish): 108259898
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Entry
108259898 CDS
T04658
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
ipu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108259898
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
108259898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108259898
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108259898
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108259898
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
108259898
U7-dependent histone pre-mRNA processing factors
108259898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
GNC1_N
Rep_Org_C
Motif
Other DBs
NCBI-GeneID:
108259898
NCBI-ProteinID:
XP_017315179
Ensembl:
ENSIPUG00000024020
UniProt:
W5U6I2
LinkDB
All DBs
Position
28:5164671..5177392
Genome browser
AA seq
1239 aa
AA seq
DB search
MESSFGEKQRSTVASQFFTGTEDAAMDMTTNEKVVDLLNQAALMSTDDKLTALKQVQELI
INKDPSLLDNYLDEMLAFQNDKSIEVRKFVIGFIEEACKRDNELLLKLLGNLNMVLKDDS
VNVVKKAILTLTQLYKVTLQWLLRTKSISDVQEGCWDMVTQMKGEVLAMLDTDNDGVRTH
AIKFTESLIITLSPRTSDSDVPKKQEGDVSLDKVPKDHSYIRYDVLCEEGKSALEQLLKF
MVHPAISSINLTTALGSLATLARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKSLK
LHLVSVLRHPSSVDFHGQISTLLLDLGMAQNEIARCVPAAAQVRKRPRHEPYSEGKRIKM
EPALIEDDDDKEEPAPVIAPKPSATTGTQSAIDITAEFLLPLLTPENVANLVLISMVYLP
DNMPASFQATYTPVESAGTDSQIKHLARLMATQMTSGGLGPGLEQCKAREEEGKEGEADA
AVAESSSKDPIIIRKVSAVSLGQAISVVGAYKSEATEETPQAKKLPEPILPSTQPKVPGS
SGRKKVFRLADVVQPMSDSQLDKLTSMAVRRILESEKAIARSGMSHVRVKLLARLITQFE
GTMKDDMLRFILEDIRSRIDLAFALLYQEYNQYLSQMPSGSLDSYEHCLFELLSGLQERP
EQRDGLFNKLVLEAPLITESALEVIRRYCEDESRVYLGMPTLKDLILKRPSRQFQYLHVL
LDLSSHEKEKVRSAALNIIKWMYEKDHLRDYIEKFALNYMQLLVHPNPPSLLFGVGEDTE
VAAPWTEETVRQCLYLYLSLLPLNHRLVHELAAVYTEAIADIKRSVLRVIEQPIRGMGMN
SPDLLLLVENCPKGAETLVTRCLHILTDKVPPSPDLVERVRDLYHKRVPDVRFLIPVING
LEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHSEGSSSVSPLTPGELLIALHNIDSTKC
DMKSIIKATNLCFGEKNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVM
NILSRLIPKQVWKYPKVWEGFVKCCQRTKPQSYTVLLQLPPAQLASVFERCPEMREPLLQ
HVRSFTPHQQAHIPSSIMAILEANSRMPEPEPPQHEPEHMKVQEERELHTQLVRPMTQVE
TPAPVVVAPPELPPEAVARREEIEEPMEEGEAGTECLEIATEATAQIEALAPETGVTPVP
QAKADEPMETTPTELAEDQPREVVEDSGAEPETRADDPE
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgagcttcggagaaaaacagcgctccactgtggcgtcccagttcttcaccggg
acagaggatgcagccatggatatgaccactaatgaaaaggtcgtggaccttctgaaccag
gctgctttaatgtccaccgacgataagctcacggctcttaagcaggtccaagagttgatc
attaataaggatccttcattgctcgacaattacctggatgagatgctagcctttcagaat
gacaaatcgattgaagtgaggaaatttgttattggtttcatcgaagaagcatgtaaaagg
gacaacgagctgttgctgaagctgttgggtaatttaaacatggtgttaaaggacgatagt
gtaaacgttgtgaagaaggcgatcctgaccctcactcagctttacaaagtgacgctgcag
tggctactgcgcacgaaaagcatctccgatgtgcaggagggatgctgggacatggtgacc
cagatgaagggggaggttctggctatgctcgacacggacaacgacggcgtccgaacgcac
gccatcaaattcaccgagtcgctcatcatcacgctgtcgcctcgcacgtccgactcggac
gtccccaagaagcaggaaggagacgtcagcctggacaaagttccaaaagaccattcatat
attcgctacgatgttctgtgtgaagagggaaagtcagctctggagcagctcctgaagttc
atggttcacccagccatctccagcatcaatctgactacagctctgggctcgctggccacg
ctagcccgacagagacccatgttcatgtctgaggtcatacaggcctatgagactcttcat
gccaacttgcccccgacgctcgccaagtctcaggtaagcagcgtgcgcaagagcctcaag
ctgcatttggtgtctgtgctgcggcacccgagcagcgtggacttccatggccagatctcc
acactcctgctggacctgggtatggcccagaacgagatcgcccgctgcgtgcccgccgcc
gcacaggttcgcaagcgaccacgccatgagccttacagcgagggcaagaggatcaaaatg
gaacccgctctgattgaggatgatgacgataaggaggagccagcacccgtcatcgcgccc
aagccgtcggccaccacaggcacgcagtctgccatagacatcacagctgagttcctgctg
cctctgctcacaccagagaacgtggccaacctggtgctcattagcatggtttacctgccg
gacaacatgccggcttccttccaagctacttacacacctgtggagtcagcaggcactgat
tcccaaatcaaacatcttgccaggctcatggccacgcagatgacctcgggcggacttggg
ccgggtctggagcagtgcaaagcccgagaagaagaagggaaggagggagaggccgatgct
gctgtagcagagagcagctcaaaagaccccatcattatccggaaagtgtcagcggtgtcc
ctgggccaggccatctctgtagtcggggcctacaagagcgaagccacagaggagacgcct
caggccaagaaacttccagaacccattctgccttctacacagcccaaagtacctgggagc
agtggccgaaagaaagtcttcaggttggctgacgtggtccagcccatgtccgactcgcaa
ctcgataagctaaccagcatggccgtcagacgcatcctcgaatcagaaaaggccatcgca
agaagcgggatgtcccatgttcgtgtgaagctgctagcgagattgatcactcagttcgag
ggcacaatgaaggacgacatgctgcgtttcatcctggaggatatccggagccgcatcgac
ctcgctttcgctcttctctatcaggagtacaaccagtacctgagccagatgccgtcaggc
tcgctcgacagctacgagcactgcttgttcgagctgctctcgggcctacaggagcggccc
gaacagagagatgggctgttcaataagttggtgcttgaggctcctctcatcacagagtca
gccctggaggtgatccggcgctactgtgaagacgagtctcgcgtttaccttggcatgccc
actctaaaagatctcatcctgaaacgcccttccagacagttccagtacctccacgttctc
ctggacctcagctctcatgagaaagaaaaagtgcgctcagctgctctgaacatcatcaag
tggatgtatgagaaggaccacctgcgagactacatcgaaaagtttgctctgaactacatg
cagctactcgtccacccgaatccgccctcgctactgttcggcgtcggagaagacacggag
gtggcggctccctggacggaggagacggtgagacagtgcctgtacctctacctctccctc
cttcctctcaaccaccgcttggtccatgagttagctgccgtctacaccgaagccatcgca
gacatcaagcgtagcgtgctccgcgtcattgaacagcctatcaggggaatgggcatgaac
tctcctgatctcttgctgctggttgaaaactgtcccaagggggcggagactctcgtaact
cgctgtctgcacatactgactgataaagtccctccatctccagacctggtggagcgagta
cgggatctctatcacaaaagagtaccagacgtgcgtttcctcatcccagtcatcaacggc
ctggaaaagaaagaggtgatccaggcattgcccaaactcatcaagctcaaccccatagta
gtcaaggaggtcttcaatcgcctactggggacgcaacacagtgaaggtagttcctccgtg
tctcctctgactcctggcgagctcctcatcgcactccataacatcgattccaccaagtgt
gacatgaagtccatcatcaaagccacgaacctgtgcttcggcgagaagaacgtgtacacg
tcagaggtgctggctgtggtgatgcagcagctaatggagcagagtcctctccctatgctg
ctcatgcggaccgtcatccagtcgcttacgatgtaccctcgcctgggtggcttcgtcatg
aacatcctctctcgcctgatccccaaacaggtgtggaagtaccccaaggtgtgggaaggt
tttgtgaagtgctgccagcgcaccaagccacagtcctacactgttctgctgcagctgccg
cccgcacagctagccagcgtgtttgagcgctgcccggagatgagggagcctctcctacag
catgtccgctccttcaccccacaccagcaagcccacattccatcatccatcatggctatt
ctggaggctaacagtaggatgccagagccagaaccaccacagcatgaacctgagcacatg
aaagtgcaggaggagagagagttacacacacagcttgtgaggcccatgacacaagtggaa
actccagctccagttgtagtagctcctcctgaactaccgcctgaggcagtagccagaagg
gaggaaatagaggagcctatggaggaaggagaggcaggtacagaatgtctagagatcgcc
accgaagccacagcacaaattgaagcacttgcacctgaaaccggggtcacccctgttccc
caggcaaaggcagatgaaccgatggagacgactcctactgaactcgcagaagaccagccg
cgagaagtggtggaagatagtggtgcagaacccgagacacgagcagacgatcctgaataa
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