Ictalurus punctatus (channel catfish): 108259954
Help
Entry
108259954 CDS
T04658
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108259954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108259954
Spliceosome [BR:
ipu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
108259954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_EML
WDR90_beta-prop_4th
PRP4
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_Vps41
WD_LRWD1
WD40_like
Beta-prop_IFT140_1st
Beta-prop_WDR11_1st
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
108259954
NCBI-ProteinID:
XP_017315288
Ensembl:
ENSIPUG00000017956
UniProt:
W5U8E0
LinkDB
All DBs
Position
28:complement(16214288..16220323)
Genome browser
AA seq
507 aa
AA seq
DB search
MSDEDEAPLVKKARIFYGSIEEKERERLARDGTISSEKDALKAGIEAGNINISSGESMEL
EERVSDRQAEVLAEFERRKRARQITVSTDDTEVKACLRALGEPITVFGEGPAERRERLRN
ILSVVGLDALKKSKKDEEKAKRSQEDSQQTWYHEGPDTLKEARIWLAKYSLPKAVKRLEA
AQAQREIPESTRTVRQQELHKTLRNLNNFCSQIGDDRPISTCQFSPNSKLLVTASWSGLC
KLWNIPDCSLVRTLRGHSTNVGAVSFHPQATLTLAESDVNMASCAADGSVKLWSLDSDEP
VADIEGHFMRVARVAWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSKGVHDLHFHP
DGSLAGTGGLDSFGRVWDLRTGRCVMFLEGHLKEVYAVNFSPNGFHVATGSGDNTCKVWD
LRKRRCIYTIPAHQNLVSSVKFQPTDGHFLLTGAYDNMAKVWTHPGWSPLKTLAGHEGKV
MGLDMSPDGQLIATCSYDRTFKLWVAD
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgaggacgaagcccctttggtgaaaaaagctcgaatcttctatggaagtatt
gaagaaaaggaaagggagcgtcttgctcgtgatggaaccatttcatcagagaaagatgcg
cttaaggctggaattgaggctgggaatattaacatctccagtggtgagtccatggagctg
gaggagcgagtgagcgaccggcaggctgaggtactggctgaattcgagcgcagaaaaaga
gcccgacaaatcacagtctctaccgatgacaccgaagtcaaagcgtgcctgcgtgccctc
ggagagccgatcacagtgttcggcgagggccccgccgaaaggcgagagaggttgaggaat
attttgtcagtagtgggtctggatgctctgaagaaatcgaaaaaggatgaagagaaagcc
aaacgttcccaagaggactctcagcagacgtggtaccacgagggtcccgacacgctgaag
gaggcacgaatctggctggccaaatattcactgccaaaagctgtgaagagactggaagct
gcacaggctcagagagagattccagaatctacacgcaccgtacgacaacaagagcttcac
aagacgctcaggaacctgaataacttctgcagtcagatcggagacgatcgtccgatatcc
acctgccagttcagccccaactccaaactgttagtcaccgcatcatggagcggtctgtgc
aaactctggaacattccagactgtagtctcgtccgcacgttaagaggtcacagtaccaac
gttggagcagtcagcttccatccacaagccacgctcacgcttgccgagtcagatgtcaac
atggcctcttgtgctgccgacggatctgttaagctgtggagtttagacagtgatgagcct
gtcgcagacatcgagggacacttcatgagggtggctcgcgtagcgtggcatccttctggt
cgctttctgggcacgacatgctatgataactcatggcgtctgtgggatttggaggtccag
gaggagattcttcaccaggaaggccacagtaaaggtgtccatgacttgcatttccatcct
gacggctccttagcaggaactggtggtctggattcctttggtcgcgtatgggacctgagg
accggtcgctgtgtcatgttcctggagggtcatctcaaagaggtttacgcagtcaacttc
tccccaaatggctttcacgtggctacggggagtggcgacaacacatgtaaagtgtgggac
ctgcggaagaggaggtgcatttacaccatccccgctcaccagaacctggtgtcctccgtc
aagttccagccgacagacggccatttcttgctaacgggtgcttatgacaacatggctaaa
gtgtggactcaccctggatggtctcctctgaagaccctggcaggacacgaaggcaaagtg
atgggactggacatgtctcctgatggacagctcattgcgacctgctcgtatgaccgcacc
ttcaaactctgggtggccgattga
DBGET
integrated database retrieval system
