Ictalurus punctatus (channel catfish): 108260043
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Entry
108260043 CDS
T04658
Name
(RefSeq) transient receptor potential cation channel subfamily V member 1
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
108260043
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ipu04040
]
108260043
Ion channels [BR:
ipu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
108260043
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ion_trans
Ank_3
Ank_4
Ank_5
Motif
Other DBs
NCBI-GeneID:
108260043
NCBI-ProteinID:
XP_017315458
Ensembl:
ENSIPUG00000013501
UniProt:
W5U8Q6
LinkDB
All DBs
Position
28:complement(13971915..13986604)
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AA seq
725 aa
AA seq
DB search
MKSFSLEVDERTDEKREEARAMREHCQAKAKTPLDTDIEKDLGCTIALIQINPNFSDEIQ
GINAEPVQHERFGLKKLFDAVSSADVNRLEGLEEYLCRTNKKLTSPDYLPNGKTVLMKAL
LNLRNGKNETVEHLLCIAERKNDLHELVNAACTDPYYKGQTALHIAIERRNKHYVELLIQ
KGADVHAKACGKFFQPLSETCFYFGELPLSLAACTNQKDIVDLLMDKADMRRTDTLGNTV
LHALVMVADNSPENTDFVISMYDYILTKDAAKNPKEKKLEDIENSQGLTSIKLAAKLGRI
GLLKHILHREFLQEECRHLSRMFTEWAYGPVCGSLYDVDDIDTYKPNSVLEIVVNGTETP
NRLEMLQIEPLNKLLEDKWNRFAKWIFLFKFIVYFIYLIIFTVTSYHREEGTPSFSFKNT
TLDYLLLAGQVIMATGSVYFLFSVLMDIHKKRPSLKKILVDGYSDLLFLLQAGLFIISAG
LYVFKRQEYLAFLVLSVAMCWVNLLYFSRGTQHMGIYNIMIQRIFLGDILRFLFVYIVFL
IGFSAAVVTLLHEPKNNSTNVTESCNKPTFKSISFTTLELFKFTIGMGDLEFTEKYENIH
AFYMLLLSYLVLTYILLLNMLIALMSKTVEDMSEKSSSIWKLQRAITILDLERFACCLKK
KLRSGVRRNLGKSEADWRWCLRVEEVNWKNWNRNLGIISEDPGECKTVMRTEPYREPSQC
DVSRK
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccttttctttggaggtagatgagaggacggatgagaagagggaagaggccaga
gcaatgagagaacattgtcaagcaaaagccaaaacaccattggacactgacatcgaaaag
gaccttggttgtaccattgccctaatccaaatcaacccgaatttttctgacgaaatacaa
ggtattaacgccgaaccagttcagcatgagaggtttggccttaagaagctttttgatgcc
gtgtccagtgctgacgtcaacaggctggagggcctggaggagtatctgtgtagaacaaac
aagaagctgacaagccctgattatttgcccaatggaaagacagtcctgatgaaggctctg
ctaaacctgagaaatggaaaaaacgaaacagtggagcacttgctgtgcattgcagaaaga
aaaaacgatcttcatgagttagtgaatgcagcatgcacagatccctactataaaggacaa
acagctcttcatatagccattgagaggaggaacaagcattatgttgagctgctcattcag
aaaggggctgatgtccatgcaaaggcttgtgggaaattcttccagccacttagtgaaaca
tgtttctactttggggagcttcctctttctctggcagcgtgtactaatcagaaagacata
gtggacctgctgatggataaagcagacatgaggcgtacggacactctgggcaacacggtt
cttcatgcccttgtgatggtggctgataacagccctgaaaatacagacttcgtcatttcc
atgtacgactacattcttaccaaagacgccgctaagaatcccaaagaaaagaagctggag
gacattgagaacagtcagggacttacttccatcaagctggctgcgaagctaggaaggatt
gggctgcttaaacacattctgcatcgtgagttcctgcaggaagagtgcaggcatctgtcc
cgaatgttcacagagtgggcatatggcccagtgtgcggttcactgtacgacgtggatgat
attgacacctacaaaccaaactctgtcctagagatagttgttaatggcacagagacacct
aatcgtctcgagatgctccagattgagccacttaataaactgctggaagacaaatggaac
agatttgccaaatggatattcctctttaagtttattgtttatttcatatatctcatcatc
ttcacagttacttcttatcaccgtgaagaaggaacaccttcattttcattcaagaacaca
actttggactaccttctgcttgctggtcaagtcatcatggctaccggatcagtctacttc
ttatttagtgtgctgatggatatacataaaaagcggccaagtctgaaaaaaatactggta
gatggctattctgacctgctttttttattacaggctgggttgtttataatctctgctggg
ctgtatgtcttcaagaggcaagagtatcttgcctttctggtgctcagtgtggctatgtgc
tgggttaatctgctctacttctccagaggaactcaacacatgggcatctacaacatcatg
attcagaggatattccttggcgacatcttgcgcttcctctttgtctacattgtcttcctc
attggattttcagcagctgtggtgactctactgcacgaacctaaaaacaatagtacaaat
gtgacagaaagctgcaacaaacccacctttaaaagcatctcattcaccacattggaactg
tttaagttcactataggcatgggagacctggagttcacggagaagtatgagaatatacac
gcattttatatgctgctcttatcctaccttgtgctcacgtatattctgctgctgaatatg
ttgatcgctctgatgagcaagactgtcgaagacatgtctgagaagagctccagcatctgg
aaactacagcgtgccatcaccatcctggatctggagagatttgcatgctgtctgaagaag
aagttgcgctcaggagtgaggaggaacctgggcaaaagcgaggcagactggcgctggtgt
cttagagtggaagaagttaactggaaaaattggaaccgcaatctgggaatcatcagtgag
gatcctggagaatgcaaaacagtaatgcgaacggaaccttacagagagcccagccagtgt
gatgtcagtcgaaagtga
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