Ictalurus punctatus (channel catfish): 108260059
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Entry
108260059 CDS
T04658
Symbol
arhgef12b
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04270
Vascular smooth muscle contraction
ipu04625
C-type lectin receptor signaling pathway
ipu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
108260059 (arhgef12b)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
108260059 (arhgef12b)
09153 Circulatory system
04270 Vascular smooth muscle contraction
108260059 (arhgef12b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108260059 (arhgef12b)
Membrane trafficking [BR:
ipu04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
108260059 (arhgef12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
108260059
NCBI-ProteinID:
XP_017315492
Ensembl:
ENSIPUG00000022803
UniProt:
A0A2D0QB20
LinkDB
All DBs
Position
28:complement(3813518..3867371)
Genome browser
AA seq
1472 aa
AA seq
DB search
MHRSDAEARSTCIGLRRWITIRFPKKPTRPGSILNKDHPPDKKPKSEKVSVPPTHDFDPT
ELPVHSVERRPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGD
RIIKVNGTLVTHSNHVEVVELIKSGSYVALTVLGRPPGLPQIPLSEGEGDGDPLSSLSSP
HSPGPTVAERSSSSSTSPSDRITSPLPAWAMKEEYGRNPTARLLKDIQEAQKHIPLLQGQ
LGKATTAGQDGLLSRRPGEGDSEEGGGLGDVDASPSWHFDSESPVNSNSTPVTPSMIPES
PYQRDTPCHSPKPMPRFSLNSCPSPDGEDAVDLDSSYQCSAGSPLSRLPPPIIGAEDDDF
DTEQEQVNGQCSCFQTMELLKSRPAHLAVFLHHVVSQFDPAPLLCYLYAELYKQSNPKET
RRIYGELHSTFMDRSAQLKVAVPDSISADMERWKPDLIPEDVQRQHVQHLQDTFLPDIQK
HLEDFRQKRSMGLTLAEAELSRLDSERVRDRAALEKERSCSEHIITRINEVLLTTSATEE
EKCTAMQFVIQAYMKHLGVKVKESRGFEPKPKLINLLPKIKKTIKPEKDGGVEVLKKSRF
QIMRSHNKRPSRTDVSSITKALEQNKQRTQKQLSQNALAPTEQPEAPSAGRIRSSQSSDG
PDGSPGSINSPTFSASPVQSSDSTARELEPGATPLSALPRLGEVGPQAEGQDSSSSGTHF
DFTYPPDHLQEEEPETDRNPDGGTPRPIRRMEPLCTGEVQSEDDQAFEVEPEQDPPHWQT
LVSTEVLALLSPHEIKRQEVINELFYTERAHLRMLKVLDNVFYQRMTRESILPPADIKNI
FTNLEEIVQLHVSITEQMTAIRKKYETAVVDLIGDDLLSWFSGTEEEKIKRAVGTFCSNQ
PFALELIKSRQKKDQRFAAFVQEAESNRQCRRLQLKDMIPVEMQRLTKYPLLLENIAKYT
DDTEEKSKVKRACECCRQILNHVNQEVKEAENKQRLEDYQRRLDLSSLKQSEYPMIAEFK
NLNLTKRKMVHEGPLSWKVNKDKTIELYTLLLEDILVLLQRQDEKLILKCHSKNLAGTAE
TKHIFSPIIKLSTVLVRSVATDNKSFFVVSMSDYGAQIYELMAQTVSEQKTWHDLIGQRA
DSMKSLPQNDGEREADDEMNSGMPKMSKDPDRISTGSVQSPEKDATSSTEIMQIPPAGSN
PFDTKSEDEEEAEGEHLPQVQDEVQDEVQDEVQDEAEEDEEEAFLDPELADRLPFLKQRS
RHAIAVEEKDLDTFDLPPLMADEALRTLAALRQLLINHMDGQEDVDRDRERGEARLRELK
AGSLQGSEENAAPGGSVENGAERTETAHVKSENRLELPSGDTGFFETSEDFGSYMVLEGY
GGSGESSTDDDGQVCSTEPAAAGDSGIDLKKLLSSVSSQSRGPNFSRQIMTHLRLLQANL
QHLKDVESKYNQLCQRHSEQAATESEENKDKS
NT seq
4419 nt
NT seq
+upstream
nt +downstream
nt
atgcaccggtctgatgctgaagctcgcagcacctgtattggcctgagacgctggattact
atcaggtttcccaaaaaaccaaccagaccaggaagcattctcaacaaggaccacccccca
gacaagaagcccaagagtgagaaggtgtcagtgcctcctacacatgactttgaccccaca
gagctgcccgtgcacagtgtagagcgacggcccgagtcgtgtgggcttgttcagcggtgc
gtgatcatccagaaagacgagaatggcttcgggttgaccgtgagcggagacaacccagta
tttgtccagctggttaaagaagatggagctgctatgcgagctggcgttcagacgggtgat
agaataatcaaggtcaacgggacgttagtaacgcattccaatcatgtagaagtggtggag
ttaataaaatcgggctcatacgtggctctgacggtgttggggagacccccgggtctgcca
cagatccccttatccgagggagagggagatggagaccctctctcctccctcagctcccct
cactcccccggccccactgtagccgagcgctcatcctcttcctccacctctccctccgac
cgcatcacctccccactgcctgcatgggctatgaaggaggagtacggcagaaaccctaca
gcgagactactgaaggacatccaggaagctcagaagcacattcctctgcttcagggccaa
ctcggtaaagccaccacggctggacaggatggcctgctttctcgaagaccgggagaagga
gactccgaggaaggaggagggttaggagacgtggacgcctctccgtcctggcactttgac
tccgagtcacccgtgaacagcaactcgacgccggtcacgcccagtatgatcccagaaagc
ccgtaccaaagagacacaccatgccacagcccaaagccgatgccgcgcttcagcctcaac
tcgtgcccgtctcccgatggcgaggacgcggtcgacctggactcgagctatcagtgcagc
gcggggagcccgttgtcccgtctgccgcctcccatcatcggagcggaggacgatgacttc
gacaccgagcaggagcaggtgaacggtcagtgtagctgttttcagaccatggagctgttg
aagtctcggcctgctcacctcgcagtcttcctgcatcacgtggtctctcagtttgaccct
gcacctctgctgtgctacctctacgccgagctgtacaagcagagcaaccccaaagagacg
cggcggatatacggggaactccactccacgttcatggaccgatcggcgcaactgaaagta
gcggtgccggactccatctcggccgacatggaacgatggaagccagacttaattccagag
gacgtccaaagacagcatgtgcagcatctacaggacaccttcctacctgacatccagaaa
catctggaagacttcagacagaagcgcagtatgggcctgactctggccgaagccgagctc
agccggctcgactcggagcgcgtgcgagaccgcgcggccctggagaaagagcgctcgtgc
tcggagcatatcatcaccaggatcaacgaagtcttgttgacgacatcagccacagaggag
gagaagtgtaccgccatgcagttcgtcatccaggcctatatgaagcacctcggggtgaag
gtgaaggaatctcgagggtttgagcccaaacccaagctaataaaccttctccctaaaatc
aagaagacgataaaaccagagaaggatggaggtgtggaggtgctgaaaaagtcccgcttc
cagatcatgcgcagccacaacaagaggcccagccgaaccgacgtctcctcgattaccaag
gctctggagcagaataagcagcgtacacaaaagcagctgtcgcagaatgctctagcgccg
accgaacagcctgaagcaccttcagccggccggatacggagcagtcagtccagtgacggg
ccagacggcagcccaggatccatcaactcgcctactttcagtgcgtcccctgtacagagc
tctgacagcacagctagagagttagagccaggcgctactcccttgtcagcattacccaga
ctcggagaggtcggtcctcaggctgaaggacaggactcgtcttcctcaggcacgcacttt
gacttcacctatcctccggaccatcttcaagaggaggagccagaaacagacaggaatcct
gacggagggacgccgcggccaatcaggagaatggagccgttgtgcacaggagaggtgcag
agtgaggacgatcaggcgtttgaggtggagccagagcaggaccctcctcactggcagacg
ctggtgagcacagaagtcctcgcactgctgtcgccgcacgagatcaagagacaggaagtg
atcaatgagttgttctacacggagcgcgctcacctgcgcatgctgaaggtgctggataac
gtgttctaccagaggatgacccgcgagagcattctgccccccgcggacatcaaaaacatc
ttcaccaacctggaggagatcgtccagctacacgtgtctataaccgagcaaatgacggcc
attcggaagaagtacgagacggcggtcgtggacctcataggagacgatttgctgtcctgg
ttcagcggaacagaagaggagaagatcaagcgggcagtaggaaccttctgcagtaaccag
ccttttgctctggagcttataaagagcaggcagaagaaggatcagcgatttgctgccttt
gtgcaggaggcggagagtaatcgtcagtgtcgaaggctccagctgaaggacatgattcct
gtggagatgcagcgactcactaaatacccacttctgctcgaaaacattgcgaaatacact
gacgacaccgaggagaaaagcaaagtgaagcgagcctgcgaatgctgccgtcagatcctc
aaccacgtcaaccaggaagtaaaagaggctgaaaacaaacagaggttagaggactaccaa
agaagactggatctctcgtcactgaagcagagcgagtaccccatgattgcagagtttaag
aacctcaacttgaccaaacggaaaatggtgcatgagggacccctgtcttggaaagtgaat
aaagacaagactattgagctctacacactcctgctagaagacatcttggtgctgctgcag
aggcaggatgagaagcttatcctgaagtgccacagtaagaatctggcaggcacggccgag
accaaacacatcttcagtccaatcatcaagctcagcaccgtgctggtgcgctctgtagca
acagacaacaaatcgttcttcgttgtgtccatgtccgattacggcgcgcagatctacgag
ctgatggcgcagaccgtgtctgagcagaagacgtggcacgatctcatcgggcaaagagca
gacagtatgaagagcctgcctcagaacgatggggagcgggaagctgacgacgagatgaac
tctggcatgccgaaaatgagcaaagatccagatcgcatctctactggaagcgtccagtct
ccagaaaaagatgctacttcctcaactgagatcatgcagattcctccagcaggaagcaac
ccatttgacaccaagtcagaagatgaggaggaggcagaaggtgagcatttgccgcaagtt
caggatgaagttcaggatgaagttcaggatgaagttcaggatgaagcggaggaggacgag
gaagaggccttcctagaccccgagctcgcagacagacttccgttcttgaagcagcgctcg
aggcacgccatcgctgtagaggagaaggacttggatacctttgacctgcctccactgatg
gcagacgaggcgcttcgaaccctggctgctctgcggcagctcctgatcaatcacatggac
ggtcaggaggatgtggacagggacagagagaggggggaggctcggctgcgtgagctgaag
gcagggtctctgcagggctcggaggaaaacgctgcccctggtggatcagtggagaacggt
gcagagaggaccgagaccgcacacgtcaagtcagagaaccgtctcgagttgccctcagga
gatacaggcttctttgaaacctccgaggactttggcagttacatggtgctggagggttac
ggcggttcgggtgagagcagcactgatgacgacgggcaggtctgcagcaccgagcctgcg
gcagcaggggactctggcattgacctgaagaagctcctgtcttccgtttcctctcagagc
agaggccccaacttcagcagacagatcatgacccacttgcgcctgcttcaggccaacctg
cagcatctgaaggatgtagaatcaaaatataaccaactatgccaaaggcactcagagcaa
gcggctactgaatcagaagaaaacaaagataaaagctag
DBGET
integrated database retrieval system
