Ictalurus punctatus (channel catfish): 108260097
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Entry
108260097 CDS
T04658
Symbol
chrne
Name
(RefSeq) acetylcholine receptor subunit epsilon
KO
K04817
nicotinic acetylcholine receptor epsilon
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
108260097 (chrne)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ipu04040
]
108260097 (chrne)
Ion channels [BR:
ipu04040
]
Ligand-gated channels
Acetylcholine (nicotinic)
108260097 (chrne)
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Gene cluster
GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
FAM176
Motif
Other DBs
NCBI-GeneID:
108260097
NCBI-ProteinID:
XP_017315559
Ensembl:
ENSIPUG00000022119
UniProt:
A0A2D0QB90
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Position
28:complement(2787176..2796934)
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AA seq
517 aa
AA seq
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MAARSIWTCLVVAALVNTIVQVSGNEESLLMADIFKNYNKNIRPAKHPEDKVDVQVKLTL
TNLISLNEKEETLTTNVWIEIQWRDYRLAWNTSEYYGIDIIRVPSTTVWRPDIVLENNID
GKFDVAYYANVLIYSDGSMYWLPPAIYRSTCSIEITYFPFDWQNCTLVFRSQTYSANEIN
MILAVDGETNKPIEWVDIDPEAFTENGEWAIKHRPARKLTNPRYSPDDLEYQEVYFNLII
QRKPLFYIINIILPCSLISSLVVLAYFMPAKAGGQKITVSISVLLAQTVFLFLIAQKIPE
TSLSVPLIGKYLIFVMSVTTLIVTNCIIVLNYSCRTPSTHSMPRKIKHIFLEVIPRFLGM
TPLVEEGEEAGGMDGVRERRRSSFGLMQRAEEYVLKQPRSEMMFDKQRERHGLTRSFVDA
IDVSTTASLYKSLAQAAPEIKECVDACNFIAENTREQNDIGSEMESWVLIGKMIDKVCFW
AAILLFSIGTVAIFLMGHFNQVPEYPFSGENKKYAPE
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggcggcccggtctatttggacttgtttggttgtggctgcgcttgtgaatacaatagtg
caagtcagtggaaatgaagagtctctgctcatggcagatatttttaagaactacaataag
aacatccggccagcaaagcatcctgaagacaaggtggacgttcaggtcaaactcaccctc
accaacctcatctccctgaacgagaaagaagagacgctgaccaccaatgtatggatcgag
atccaatggcgtgactatcgcctggcgtggaacacctcggagtactacggcatcgacatt
atccgcgtaccctccaccactgtgtggcggccagatatagtactggagaacaacattgat
gggaaatttgatgtcgcatactatgctaatgtgctaatctatagtgatggctccatgtac
tggttgcccccagccatctaccgcagcacctgctctatagagatcacctacttcccattc
gactggcagaactgcacgctggtcttcaggtctcagacatacagcgctaacgagatcaac
atgatcttggccgtcgatggcgagaccaacaagcccattgagtgggtggatattgaccct
gaggccttcactgaaaacggtgagtgggctatcaagcatcggccggcacgcaaacttacc
aacccccgctactccccggacgacctggagtaccaggaggtctatttcaacctcattatc
cagaggaaacccctcttctacatcatcaacatcattctgccctgctcgctcatctcctca
ctcgtcgtactggcctacttcatgcctgctaaggcgggaggacagaagataacggtgtcc
atctccgtcctcctggctcagactgtcttcctctttctgatcgctcagaagattccagaa
acgtctctgtctgtacctcttattggaaagtacctgatcttcgtcatgtccgtcaccaca
ctcatcgtcacaaactgcatcatcgttctcaactactcatgccggaccccgagcacccac
agcatgcctcgcaaaatcaaacatattttcctggaggtaatccctcggttcctgggtatg
accccactggtggaagagggagaggaagctggagggatggacggagtaagggagaggaga
cgcagctcatttggcctgatgcagcgggcggaggagtacgtgctgaagcagccgaggagc
gagatgatgttcgacaagcagagagagagacatggactcacgcgatcgtttgtggacgct
atagatgtgagcaccacggccagtctgtataagagtttggctcaagcagcaccagagatt
aaagagtgtgtggacgcctgcaacttcattgcagaaaacacaagggaacagaacgacatt
ggctctgagatggagagctgggtgttgatcggaaagatgatcgataaagtctgcttctgg
gcggccatcttgcttttttccatcggaacggtggccatcttcctcatgggccatttcaac
caggtcccagagtaccctttctctggggaaaataaaaaatatgctcccgagtaa
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