Ictalurus punctatus (channel catfish): 108260177
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Entry
108260177 CDS
T04658
Symbol
sox19a
Name
(RefSeq) transcription factor Sox-19a
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108260177 (sox19a)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108260177 (sox19a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
108260177
NCBI-ProteinID:
XP_017315740
Ensembl:
ENSIPUG00000021379
UniProt:
A0A2D0QEF3
LinkDB
All DBs
Position
28:complement(19930494..19933849)
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AA seq
281 aa
AA seq
DB search
MNMYSMLDHELKSPLQHAPVMMPPVNGSVHASSTPAAPCAQKSSEALDKVKRPMNAFMVW
SRGQRRKMAQENPKMHNSEISKRLGAEWKLLADAQKRPFIDEAKRLRALHMKEHPDYKYK
PRRKTKPATKKDCPVSALPLSAGTLSGSARMEGYGWGAAGGYGSAQGDALGYTQQIHRYD
LSSFQYPSAHSYMNSASAYSPVQYGTQQSSPVMSMVKPDQLSPSSSGGGPSQPRTPLQPD
LRDMISMYIPSGSGDTGDSQRNYTTNLQQHYLTSTASLTHI
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atgaatatgtacagcatgctggatcacgagctgaaaagcccgcttcagcacgcgcccgtc
atgatgccgccggtgaacggaagcgtgcacgcgagctccacaccggcggcgccgtgcgct
cagaagagctccgaggctctggataaagtgaagcggcccatgaacgccttcatggtgtgg
tcccgcggccagaggcgcaagatggcgcaggagaacccgaagatgcacaactctgagatc
agcaagcggctcggcgcggagtggaagctgctcgcggacgcgcagaaacggcccttcatc
gacgaggccaagcggctgcgcgcgctgcacatgaaggagcatcccgactacaaatacaaa
ccgcggcgcaaaactaaacccgcaaccaagaaggactgtccggtgagcgcgctcccgctg
agcgccgggaccctgagcggaagtgcccggatggagggttacggctggggcgcggcggga
ggatacgggagcgcgcagggggacgcgcttggttacactcagcagattcaccggtacgac
ctgtcgagcttccagtacccgagcgcgcacagctacatgaacagcgcgagcgcgtacagt
ccggtgcagtacggtactcagcagtccagcccggtcatgtccatggtcaaaccggatcag
ctgtctccgtcctcgagcggcggcggtccgagtcagcctcgcactccgttacagcccgac
ctgagggacatgatcagcatgtacatcccgagcggaagcggagacaccggagactcacag
aggaactacaccactaacctgcagcagcactacctcaccagcaccgcctcactcacacac
atctga
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integrated database retrieval system
