Ictalurus punctatus (channel catfish): 108260279
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Entry
108260279 CDS
T04658
Name
(RefSeq) beta-hexosaminidase subunit beta isoform X1
KO
K12373
hexosaminidase [EC:
3.2.1.52
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu00511
Other glycan degradation
ipu00513
Various types of N-glycan biosynthesis
ipu00520
Amino sugar and nucleotide sugar metabolism
ipu00531
Glycosaminoglycan degradation
ipu00600
Sphingolipid metabolism
ipu00603
Glycosphingolipid biosynthesis - globo and isoglobo series
ipu00604
Glycosphingolipid biosynthesis - ganglio series
ipu01100
Metabolic pathways
ipu04142
Lysosome
Module
ipu_M00079
Keratan sulfate degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
108260279
09107 Glycan biosynthesis and metabolism
00520 Amino sugar and nucleotide sugar metabolism
108260279
00513 Various types of N-glycan biosynthesis
108260279
00531 Glycosaminoglycan degradation
108260279
00603 Glycosphingolipid biosynthesis - globo and isoglobo series
108260279
00604 Glycosphingolipid biosynthesis - ganglio series
108260279
00511 Other glycan degradation
108260279
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
108260279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
ipu03110
]
108260279
Enzymes [BR:
ipu01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.52 beta-N-acetylhexosaminidase
108260279
Chaperones and folding catalysts [BR:
ipu03110
]
Intramolecular chaperones
Others
108260279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_20
Glycohydro_20b2
Glyco_hydro_20b
MHV_Nsp3_DPUP
Motif
Other DBs
NCBI-GeneID:
108260279
NCBI-ProteinID:
XP_017315907
Ensembl:
ENSIPUG00000024169
UniProt:
W5USJ9
LinkDB
All DBs
Position
28:complement(6992596..7012266)
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AA seq
538 aa
AA seq
DB search
MRALTLLLTITVCNGWLFDHFGERYRETDDVSLWPLPQKYQTTPTAFKLSASSFQIVHAK
DSSAGPSCSLLQNAFRRYFSYMFDYVKKHGMNQDKGLDSELSELQVQITSTDPECDGYPS
LKTDESYQLLVDQPAAVLKAANVWGALRGLETFSQLVYEDNYGAITINKTDVSDFPRFAH
RGILLDSSRHFLPLKVILANLEAMAMNKFNVFHWHIVDDHSFPFLSRTFPDLSQRGAYHP
YTHVYTPADVKMVIEFARMRGIRVIAEFDTPGHTQSWGKGQAGLLTSCYSGSTPSGSFGP
VNPILNSTYDFMARFFKEVSTVFPDAYIHLGGDEVDFSCWRSNPDIQKFMEQQGFGQDYS
KLESYYIQRLLDIVKATNKGYMVWQEVFDNGVKLKADTQIHVWKEKPDYNSEMAQITAAG
FHALLSSPWYLNRISYGQDWQGVYKADPQSFNGTAEQKKLVIGGEACLWGEYVDATNLTP
RLWPRASAVAERLWSDENVKDVNNAYTRLVKHRCRMLRRGIPAEPLFVGYCPHEYDGL
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgcgctaacgctgttattaacgattaccgtttgtaatggttggctgtttgatcat
tttggagagagatatcgggagactgatgacgtctcgctttggccgctgccacagaaatat
cagacgaccccgactgcattcaaactcagcgcttcgagttttcaaatcgttcacgctaaa
gattcgtccgcgggaccgagctgcagcctgctccaaaatgccttccgcagatacttcagt
tacatgtttgactatgtgaagaaacatggcatgaaccaagataaaggtttggactccgag
ctgtctgagcttcaggtgcagatcacatccacagacccggagtgcgatggttatccgagt
ctaaaaacagatgaatcctatcagcttttggtggaccaacctgcagctgttcttaaggcc
gcaaatgtatggggcgcattgagaggacttgagaccttcagccagctggtgtatgaagat
aattatggagctattactatcaacaagacagacgtatctgactttcctcgcttcgctcat
cgaggcatcctgctggactcatctcgtcacttcctgccactcaaagtcattttggccaat
ttggaagccatggcgatgaacaagtttaacgttttccactggcacattgtggacgatcac
tccttccccttcttgagtcggactttccctgacctcagtcaaagaggagcctatcaccct
tacacacacgtgtacacaccggctgatgtgaaaatggtgattgagtttgctcgtatgcga
ggcattcgagtcattgccgagtttgacactccaggccacacccagtcatggggaaaaggt
caggctggtcttttgacctcatgctactcgggcagcactccttcaggttcctttggtcct
gtgaaccccatcctcaattccacatacgacttcatggcccgctttttcaaagaagtcagc
actgttttccctgatgcctacatccaccttgggggagatgaggttgatttctcctgctgg
aggtcaaaccctgatattcagaaatttatggagcagcaaggctttggccaagactacagc
aaactggagtcctactatattcaaaggctccttgacattgtaaaagccaccaataagggc
tacatggtctggcaggaggtctttgacaatggtgttaagctgaaagcagacacacagatc
cacgtgtggaaggagaagccggactacaacagtgagatggcccagataaccgcagctggg
tttcatgccctactttcttctccctggtacctaaaccgcatcagctatggccaagactgg
caaggagtttacaaggctgaccctcagagtttcaatggcacagcagagcagaagaagctt
gtaattggaggggaggcatgtctctggggagagtatgtggatgctaccaaccttacgcct
cgcctatggccacgggccagtgcagtagctgaaaggttgtggagtgatgaaaatgtgaaa
gatgtcaacaatgcctacactcgtctggtcaaacatcgctgccgcatgctcaggagaggc
atccctgcagagcctctgtttgtgggttactgtccacatgaatacgacggcctgtga
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