Ictalurus punctatus (channel catfish): 108260547
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Entry
108260547 CDS
T04658
Symbol
lrrc4bb
Name
(RefSeq) leucine-rich repeat-containing protein 4B
KO
K16360
netrin-G3 ligand
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04514
Cell adhesion molecule (CAM) interaction
ipu04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
108260547 (lrrc4bb)
04517 IgSF CAM signaling
108260547 (lrrc4bb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ipu04515
]
108260547 (lrrc4bb)
Cell adhesion molecules [BR:
ipu04515
]
Immunoglobulin superfamily
NGL family
108260547 (lrrc4bb)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
ig
LRR_9
V-set
LRR_14
LRRNT
Ig_2
VEGFR1-3_N_Ig-like
Ig_6
Motif
Other DBs
NCBI-GeneID:
108260547
NCBI-ProteinID:
XP_017316454
Ensembl:
ENSIPUG00000005616
UniProt:
A0A2D0QE25
LinkDB
All DBs
Position
1:complement(38875508..38891421)
Genome browser
AA seq
727 aa
AA seq
DB search
MLAAMLTGLCSPFPLLSLVQLLLWPYLSGPQLAEAAPPCPAPCTCSNQASRVICTRKGLD
EVPQSISVNTRYLNLQENSIQMIKSDTFKHLSHLEILQLSKNHIRQIEVGAFNGLPNLIT
LELFDNLLPLVPSQAFEYLSKLRELWLRNNPIETLPAYAFHRVPSLRRLDLGELRKLSFI
SEVAFEGLVNLRFLNLGMCGLKDVPNLTPLVKLEELELSGNQLGVVRPGSFQGLVSLRKL
WLMHSRISLIERNAFDDLKNLEELNLSHNSLHSLPHDLFTPLQQLERVHLNHNPWVCGCD
VLWLSWWLKETVPDNSTCCARCHAPPGTKGRYIGDLDQRDFTCYAPVIVEPPTDLNVTEG
MAAELKCRTGTSMTSVNWLTPNGTLMTHGAYKVRISVLHDGTLNFTNVTMQDTGPYTCMV
TNSAGNTTATAVLNVSASDPGSGYSYFTTVTVETVETGQEVHNSARQFVNETFIGFPGPT
ASSGSTGPSGSVPSSLSPHVTRAPERPFTVSITDVANLSGLEDVMKTTKIIIGCFVAITF
MAAVMLVVFYKLRKQHQLHKHHGPARAIEIINVEDEMGPPGGASGIAGGSTLHSGAGPGT
GSGPGPNLRLHDPEIVTLPNIGRSDHVNHYYKTHHFNNNVLGLNMGVGQTGNKTSPSSKK
QALSTNQTATSVDSTNPGSVSPPLPIPIPMAMTFHGTLKSFSHTPSSQNEPLLLSNGSKE
SVQETQI
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgttggctgccatgttaacaggcctctgtagccccttccccctcctctccttagtccag
ctcttattatggccatatctcagtggaccacaactggctgaggcggctcccccttgccct
gccccctgtacctgctccaatcaggcgagtagggtgatttgtaccagaaagggactggat
gaagtcccacaaagcatctcagtcaacacacgatacctcaacctgcaagaaaactccata
cagatgatcaaatctgacacctttaaacacctgagtcacctggagatccttcagctgtca
aagaatcacattcgtcagattgaagttggagcatttaatggcctcccaaacctcatcacg
ctcgagcttttcgataatcttctgccattggtcccatcgcaagcatttgaatatcttagt
aaactgcgtgaactctggctgcgaaataatccaatagaaacgctcccagcctatgctttc
caccgtgttccttccctccgtcgtttggaccttggtgaactccggaagctcagtttcatc
tcagaggtggcctttgaaggactagtaaacctccgctttctgaatttgggaatgtgtgga
ttgaaagatgttccaaatttgacgccactcgtgaaactagaggaacttgaactttctggg
aaccagctaggcgtagttcgtccaggatctttccaaggtcttgtttcacttcgcaagttg
tggcttatgcactcacgcatctcgctgattgaacgcaatgcttttgatgacctgaagaac
ctagaggagctcaacctgtcccacaattccttgcattcactgccccatgacctttttaca
ccactacaacaactcgaaagggttcacctgaaccacaatccctgggtttgtggctgtgat
gttctctggctcagttggtggttgaaggagactgtgccagataactccacctgctgtgct
cgctgccatgctccgcctggcaccaagggacgctacatcggtgacctggatcagagagac
ttcacttgctatgcccctgtgatcgtggagccgccaactgacctgaatgtgactgaggga
atggcagcggagctgaaatgtcgaactgggacatctatgacctctgtgaattggttgacc
cctaatggaaccctgatgacccatggtgcttacaaagtacgaatctcagtgttacatgat
ggcaccttgaacttcactaatgtcaccatgcaggatactgggccatacacctgcatggtg
accaactcggccggaaacaccacggcaaccgccgtcctcaacgtgtctgcctctgaccct
ggcagtggatacagctactttacaacagttactgtggaaacagtggagactgggcaggaa
gttcacaattctgctcggcaattcgtcaatgagaccttcatcggttttccaggaccaaca
gcatcatcagggtcaaccggaccttcagggtcggtgccatcgtccctgtcacctcatgtt
actcgtgctccagagcgccctttcacagtctctatcactgacgttgctaatctttcaggt
cttgaggacgtaatgaagacaacaaagatcataattggctgctttgtagccatcaccttt
atggctgctgtgatgcttgtggttttctacaaactgaggaagcagcaccagctacacaag
catcacggtcctgcccgtgccatagagataatcaacgtcgaggatgaaatggggccacca
gggggtgctagtggcattgcaggtggttccacccttcactccggggcaggaccaggaact
gggagtggacctggaccaaatcttcgactccacgaccctgaaattgtcactctgcccaac
atcgggcgctcagatcatgttaatcactactacaaaactcaccactttaacaacaacgtc
ctgggactcaacatgggggtggggcaaactggaaacaagacaagcccctcctccaaaaaa
caggccctgtccaccaatcagacagccacatctgttgactccactaatcctggatctgtc
tctccaccgttaccgattccgatcccaatggcaatgactttccatggaacactgaagagc
ttcagccacacccctagctctcagaatgagcctctgctgctgtccaatgggtccaaggag
agtgtgcaggaaacacagatctaa
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