Ictalurus punctatus (channel catfish): 108260577
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Entry
108260577 CDS
T04658
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu02010
ABC transporters
ipu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
108260577
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108260577
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ipu02000
]
108260577
Transporters [BR:
ipu02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
108260577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
108260577
NCBI-ProteinID:
XP_053533603
Ensembl:
ENSIPUG00000010251
UniProt:
A0A9F7RE66
LinkDB
All DBs
Position
29:complement(9569815..9770615)
Genome browser
AA seq
2231 aa
AA seq
DB search
MGLLVQLRLLLWKNFTLRKRQKLRLVIELIWPLFLFFILVWVRSTNHPVYKGQCHYLNKP
MPSAGVLPWLQGMVCNIQNPCVSEPTPGETPGQVNNFNDSIIAKALTEVQSVLADSLLLS
NIKLLSDDINKWSSVLENFNTAKGHSIPLRSVLRDNEMLSEYLKSNLSLSSATAQRLMAV
RLQLNQLPALSRVTDLRSTLCNSSVDRFLEFNSTSQRQEFQNITCSLTPKQLQQTRAVLM
QNLDNRKLMASLPLVLNMNPADFATLLASTSSHAAPLAIQASKLQTTSILNAMNSLDFRS
NPFGSLTLFMCGGNSSSNTSSAKPAFRLPAQATLSLSSNSSQGNSSEFCQNLIDTLKNTP
ALRLFWTSLRPLLQGRVLYTPDTPFTRQIMAQANNTFNTLAKVGELADTWLENEDKIWNF
FQTSTQINTLRAFLQNPLILAVLDQQLNGNGLSSALIANFLFNGDEKDRPAGMPAFDWRN
VFNTTSQVARLIKQVMGCFNLDKFEAVASERVLVEQALKLLDQEKFWAGVVFTDLVAGSP
SLIRYKIRMDVEETERTDKIKDRSWSPSARDNPFNDLRYVRGGFVYLQDMLDRAIIQTHT
GVRQPLGVYVQQMPYPCYVDDAFVSSIATILPMFLVLSYMYSVCQTIKGLVLEKELRLKE
ILRVVGVRNGALWFSWFTENIVLLTMPCALISIMLKYGKVLRYSDPSVIFVFLLVFCIAT
VMQCFFISVFFSRANLAAACGGLIYFLLYLPHVLCYAWRDVMTFRAKLATSLLSCVAFGY
GCENFARYEEQGIGIQWKNIMVSSQDDDPYTFLVSIIMMLIDSLFYWILTWYIENVFPGQ
YGIPRPWYFPLTSLYWCGTPAGVDVDPDPLDALEQQNGYLEKPPSNLKAGVSIRNLVKVY
KTGKKLAVDKLSLDFYQDQITSFLGHNGAGKTTTMSILTGLFAPTSGTAYVNGFDIRKDM
DSIRKTLGMCPQHNVLFNDLTVEEHIYFYARLKGRSSEEVKQEIDQMIKDVGLPHKRKDL
AKNLSGGMQRKLSVAIAFVGGSNVVILDEPTAGVDPYARRGIWELLLKYKTGRTIILSTH
HMDEADILGDRIAIISHGKVCCCGSSLFLKKTYGRGYYLTLARANQEIMTSQCHTAGKQL
SDASSLDEGIGSGSISTMEPADVADVSSVIRLHVPEAEFLEVIGQELVYVLPYAGSKDGS
FASLFKELDLERERLGISSYGISDTSLEEIFLKVAEETGVDVETNEKGEMLQRDWKRSSR
LSRSHSMSSAMDHRDSAASKQAEKKGRFSNRVEDGQRPVCVNGKGSCVITGWALIRHQFL
ALFIKRFHHARRSRKGIIAQVVLPALFVCLSLIFSLIVPPFVEYPSLELQPWMYGKPQNT
FYSADRTDVDEAVRVTRALLSEPGFGTRCMDGNPIPKYPCTPSGATGWFTPSVDPAILEI
FKHGNWSMQNPSPDCQCSTPQRNIMLPDCPPGAGGLPPPQKTQNTTDTLQDLTGGNMTDF
LLKTYAKSGKIRYGGISVGAINSQVKLNESEIAVLLTDLKTLFNSSQNNITEKFFQDLEM
LLVELGTKDNVKVWFYNQGWHAIVSFLNVATNAILRGNLPAGVQPKLYGISAFNHPLNLT
KQQLTATLLSSSTDVVVAICVIFAMSFIPASFVLFLIQERVSKAKHLQFVSGVNPAVYWV
ANFTWDMCNYVVPCLIVIVIFLCFQQKAYVSPQNLPTLILLLVLYGWAITPMMYPASFVF
SVPSTAYVVLTCINLFIGINGSIATFVMEMFNDPNITDINNIVKQVLLIFPHFCLGRGLI
DMAKNQAMATLFISLGEDRFEDPLSWNMVGKNLFAMAIQGVVMFSFTLLIQYKFFCKPRL
VTGLPRSAGEEDEDVARERERVQRGKAQNDLLRVCDLTKVYSGKKIPAVDRITVGVPAAE
CFGLLGINGAGKTTTFKMLTGDIRPSGGEAFLCGYSIRTEMSQVHQNMGYCPQFDGIDDL
LTGREHLEFYARLRGVPEREVTTVAEWGIQKLGLVKYSNKSAGTYSGGNKRKLSTAMALI
GCPPLVFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSMEECEALCTRMAIMVNG
HFKCLGSIQHLKSRFGDGYTVIVRVRGSPADLSTVEDFVTQMFPGSVLKEKHHNTLQYQM
PHKEGALSHIFSEFSRNQQTLGVEDYSVSQTTLDQVFVNFARQQHDAEDGVYDNPVDLSD
EIPMHTHTHTE
NT seq
6696 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctggtgcagctcaggcttctgctctggaagaacttcactttgcgcaagaga
cagaagttgcggttggtaatcgagttaatatggcctttgttcctgtttttcattctggtg
tgggtgagatccacaaatcatcctgtctacaaaggccagtgccattacctcaacaagccg
atgccctcggctggggtgttgccatggttacagggcatggtctgcaacatccagaatcca
tgtgtcagtgagccgacacctggggaaacccccggccaggtcaacaacttcaacgactcc
atcattgcaaaggcattaacagaggttcagtctgtcttagcggactccttgctgctgtct
aacatcaaacttctctctgacgatatcaacaaatggtcttctgtccttgagaatttcaat
acagccaaaggtcactcaattcctttgcgcagtgtgctgagagataatgagatgctctcc
gagtacctgaagagcaacttgtcattatcaagtgcaactgcccagaggctgatggctgtg
agactccaactcaatcagttacctgctctctcacgtgtgacggacttacgctccactctg
tgtaactcctctgttgaccgcttcctggagtttaactcgacgagtcagagacaggagttc
cagaacatcacgtgttccctgacgcccaaacagcttcaacagaccagagcagttctcatg
caaaatctggacaacagaaagcttatggcttctttgcctttagtactgaatatgaaccct
gccgatttcgccactttgctggccagcacaagctcccatgcagcccctctggcaattcag
gcatctaaattgcagaccacatccatcctaaatgccatgaactctctagacttccgctca
aatcctttcggcagtttgactctgttcatgtgtggtgggaattcaagctccaataccagc
agtgcgaagccagcctttcgattgccagcacaagccacactctcactaagctcaaactca
tcccaaggcaactcaagtgaattctgtcagaatctgattgacactttgaaaaacacaccc
gccctccgtcttttctggactagtctccgcccacttcttcagggacgagtcctctacact
ccggacacgccctttacgcggcagattatggcacaggccaacaacactttcaacactctg
gctaaagtcggcgaactggctgacacttggcttgaaaacgaggacaagatctggaacttc
ttccagaccagcacgcaaatcaacacactccgggcttttctgcagaacccactcattttg
gcagttcttgatcagcagctgaatggaaacggattgtcttcagcacttattgctaatttt
ctgttcaacggtgatgaaaaggaccggcctgcagggatgccggcatttgactggagaaac
gtcttcaacaccaccagtcaggttgcgagactcatcaagcaggtcatggggtgcttcaat
ctggacaagtttgaggccgtggccagtgagagagtgttggtggagcaagccctcaagctg
ctagatcaggagaagttttgggctggagtggtttttacagacctggttgctggcagccca
tcactcatcagatataagatccgcatggatgttgaggaaaccgagaggacggataagatt
aaagacaggtcctggtctccgtcagcccgtgataacccatttaatgacctgcgctatgtg
agaggaggctttgtgtatctgcaggacatgctggaccgtgctatcatccagacacacaca
ggcgtcagacagcctctgggcgtctatgtgcagcagatgccttatccatgctatgtagat
gatgcctttgtgtcgtccatcgccaccatcctgccgatgttcctggtgctgtcctacatg
tactcagtgtgccagaccatcaaagggctggtcctggagaaggagctgcggctgaaggag
attctccgagtggtgggcgtgagaaatggtgcgctctggttctcctggttcacagaaaac
atagttctgctaacgatgccatgcgcgctgattagcataatgctgaagtatgggaaggtt
ctgagatatagcgacccgtcagtgatcttcgtgtttctgctggtgttctgcatagccaca
gtcatgcagtgcttcttcatcagtgtctttttctcacgagcaaatctggctgccgcctgt
ggtggacttatctacttccttctctacctgccccatgtgctctgttacgcctggagagac
gtcatgaccttccgagccaagctcgccacgagcttgctatcgtgtgtggcgtttggctat
ggctgtgagaattttgcacgatatgaggagcagggcattggtatccagtggaagaacatt
atggtcagctctcaggatgatgacccttacaccttccttgtctctatcatcatgatgctg
attgacagtctgttctactggatactcacctggtacatcgagaatgtcttcccagggcag
tatggaattcccaggccttggtatttcccgttaacctccttgtattggtgtgggacacca
gctggtgtggatgtagacccggatcctcttgatgcactggagcagcagaatggttacctg
gaaaagcctccttctaacctgaaggcaggtgtatctatacggaacctggtgaaggtgtat
aagactggaaagaaattggctgtggataaactcagtctggacttctaccaggaccagatc
acatcgttcttaggacacaatggtgcgggaaaaaccaccactatgtccattctgaccggc
ctgttcgccccgacatccggcacggcttatgttaacggcttcgacattcgcaaggacatg
gacagtatacgcaagacgcttggcatgtgcccacaacacaatgtcttatttaatgacctc
actgtggaggagcacatttatttctatgcccgtctcaaggggagaagctccgaggaagta
aaacaggaaatagatcaaatgatcaaagatgttgggctgccgcataagcgcaaggatctc
gccaagaacctttcaggtgggatgcagaggaagctgtcagttgccatagcatttgtggga
gggtccaatgtggtgatcctggacgagccgacagcgggagtggatccatatgccaggagg
ggaatctgggaactgctgctcaaatataaaacgggccgtaccatcattctgtccacgcac
cacatggatgaggcggacattttgggcgatcgcatcgccatcatctcccatggcaaggtc
tgctgctgcggttcctccctcttcctgaagaagacatatggcagaggctattacctcact
cttgcacgggccaatcaggagataatgacatcacaatgccatacagcaggcaaacagctc
agtgatgcgtccagtttagatgaagggatcggatcaggaagcatcagcaccatggagcca
gcagatgtagcagatgtcagttctgtcatacgcttgcacgtcccggaggcggagttccta
gaggtcataggtcaggagctggtgtatgtgctgccttatgctggctcaaaagacggcagc
tttgcctcgcttttcaaagagcttgatttggagagagagaggctggggatcagtagctac
gggatctcagacaccagcttagaggagatatttctgaaagtggcagaagagacgggcgtc
gatgtggaaacgaatgagaagggagagatgcttcagagagactggaagagaagctctaga
ctgtctagatcacatagcatgagttcagccatggaccacagagacagtgcagcttctaaa
caagcagaaaagaaaggacggttctcaaatcgagttgaagatggtcagcggcctgtgtgt
gtgaatggcaaaggttcatgtgttatcaccggctgggctctgatcaggcatcagttcctg
gcgttgtttataaagcggtttcaccatgcaagaagaagcagaaaaggaatcatcgctcag
gtggtgctcccagcactatttgtgtgtctgtctctgattttctctctaattgtcccaccc
ttcgtggagtatcccagtctggaactgcaaccctggatgtatggaaaaccacagaacact
ttctacagtgctgacagaacggacgtggatgaggcagtgagggtaacacgtgctctcctt
tctgaaccaggctttggcacccgctgcatggatggcaaccctatacctaaatacccatgc
actccttctggagcgacaggctggttcactccttcggtagaccccgccatcttggagatc
tttaagcacggaaactggagcatgcagaatccatctccagattgccagtgcagcactccc
caacgcaacatcatgctgccagactgccctcctggtgctggaggattaccaccaccccag
aaaacgcagaacaccacagacacgctgcaggacctcacaggtggaaatatgactgacttc
ttgctcaagacctatgcaaagtctggaaaaatacggtatggagggatctcagttggtgct
ataaactctcaggtgaaactcaacgaatctgagattgctgtacttcttacagacctaaag
actctcttcaactcatcacagaacaacataactgagaagttcttccaggacttggagatg
ttactggtagagctgggaacgaaggacaatgtcaaagtgtggttctataaccagggatgg
catgcaatagtatcattcctgaatgtggctactaatgccatcctcagagggaatcttcca
gctggagtacaacccaaactgtatggcatctcagcctttaaccatcctctcaacctcacc
aaacagcagctcaccgccacattgttgtcgagctctacagacgtggtggtggcgatctgt
gtaatcttcgccatgtcctttatccctgccagctttgtcctctttctcattcaagagcgt
gtcagcaaagctaaacacctgcagtttgtcagtggagtcaatcctgctgtgtactgggtg
gccaacttcacctgggacatgtgtaattatgtcgtcccatgtctcatcgtcatcgtcatc
ttcctctgcttccaacaaaaagcgtatgtttcgcctcagaacctgcctacactcatcctc
ctgttggtgctctacgggtgggcaatcacacctatgatgtacccggcttcgttcgtgttt
agcgttcccagcacggcatatgtggtcctcacctgcatcaatctcttcattggcatcaac
ggcagcattgctaccttcgtcatggagatgttcaatgacccgaacattactgatatcaat
aacatagtgaagcaagtgttgctgatcttccctcacttttgtctgggccgtggcctcatc
gatatggccaagaaccaggccatggcaacactcttcatcagtctgggagaggataggttt
gaggatcccctgagctggaatatggtagggaagaatctgtttgccatggcgatacagggt
gtagtcatgttcagcttcaccctcctcatccagtacaagtttttctgtaaaccaaggtta
gtcactgggttgccaagatctgcaggagaagaggatgaagacgtggctagagagcgtgag
cgagtgcagagaggaaaagcccagaatgatctactcagggtttgtgacctcacaaaggtg
tactcgggtaagaagatcccagcagtggacaggataactgtgggtgtcccagctgctgag
tgcttcggcctactgggtataaacggggcaggaaaaaccacaacgtttaaaatgctgact
ggagacattcgaccctcaggtggagaagccttcctctgtggatacagcattcgtacagag
atgagccaggtccatcagaacatgggttattgtcctcagtttgatggtattgatgacctc
ctaacaggacgagagcatctggagttctacgcacgcctccggggggtgccagagagggag
gtcaccacggtagcagaatgggggatacagaaactgggtctggtgaaatactccaataaa
tctgcaggtacctacagcggagggaacaaacgcaagctgtctacagccatggctctgatt
ggctgccctcctctcgtctttctggatgagccgaccacagggatggatcctaaagcgcgc
cggttcctgtgggactgcatcctcagtgtgatcaaagagggtcgatcagtcatcctcacc
tcacacagtatggaggagtgtgaggctctgtgtactcggatggccatcatggtcaatggc
cactttaagtgtctgggcagcatacaacatctaaagagcaggtttggcgatggttacacg
gtgatagtgcgtgtcaggggaagtccagctgatctgagcacggttgaggactttgtgact
cagatgttccccggcagtgtgctgaaagagaaacaccacaatacgctgcagtaccagatg
ccccacaaagagggcgctctctcacacatcttcagcgagttcagcagaaaccaacaaact
ctgggagtggaggattactcagtctctcaaaccacactggatcaggtgtttgtgaatttt
gcacgccagcagcacgatgctgaagacggtgtgtacgacaatcctgtagatctgagtgat
gaaataccaatgcacacacacacacacactgaataa
DBGET
integrated database retrieval system
