Ictalurus punctatus (channel catfish): 108260591
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Entry
108260591 CDS
T04658
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108260591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108260591
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108260591
mRNA degradation factors
5'-3' decay
Decapping complex
108260591
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
108260591
NCBI-ProteinID:
XP_053533519
Ensembl:
ENSIPUG00000016627
UniProt:
A0A9F7TDP1
LinkDB
All DBs
Position
29:15803688..15812383
Genome browser
AA seq
771 aa
AA seq
DB search
MFRFQSFDNDCTLEEEEEEGLVDDEDEIDQFNDDTFGAGAIDDDWQEEHARLAELDEKDG
LLGGGDASPVVPPPPESVPLPSSLPPPPTSSLSPLGSEDKAGDDLAESLAYLILDSDPAI
AVVGAAELDRSRLPPSAPSNQALPPGLSGVSRSLLSYQQKQHLLHRGTVPPLQQMNSHSI
WENNMGFGPVSVTHGLVTHMEESPLLSMMKELPKRIPPISREEGRDLSERVPPPRASSPV
IGSPPVRAIPIGTPPKQPMSHALNQQIHHPTAVHVRAPVPHRYPPPFPERLSPNTLLNIA
NSHLCCPPFPAGVAPVLSQIQRAQLLNSQVGPFPRGPGPAPPMLPGAAGGFRPYFGQPPP
PPRVGPHGPHPSHAPIRHNTTHLHPQHRRMLTQRMQSRDVGARGGGGDRRIRDPYSNLMT
QKEKDWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDSSRKEHTTKLITPQVAK
LEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTSRSDDEEKREKQVWNKRRQILYTVEK
MYSLLLEVQDFEKKFIQTPEEEREALLEQHKSNTLLLYNSLREKEWDDRVSDEQCLMIMS
VRKGKRLVARLLPFLTSSQAAAIVMGIARNLPALAKKDRQDQVLCWLVEPVVGVVQSMSS
SALTDLLQELQGGDGHFPRVLQNKFGVTLLYLVLSEGERMQSSDPNCQLMDDNRWTELVF
SVTRELLQVPSSSLSPPLFTPPNLLSLFSRYVDRQRLEQLQEKLQITALSR
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgttccgttttcagtcctttgataatgactgcaccctggaggaggaggaggaggagggt
ctggtagatgacgaagatgaaattgatcagtttaacgatgacaccttcggcgctggagcg
atcgatgatgactggcaggaggagcatgcgcgactggcggagttggacgagaaagatggg
ctgctgggaggtggggatgcgtcccctgtcgtccctcctccgcctgagagcgtccctctt
ccctcctctctccccccaccccccacttcctccctctctccgcttggctccgaggacaag
gccggggatgacctggccgagtctctggcttaccttatcctcgactcggatccggccatc
gcagtggtgggcgcggccgagctggacagatcccgcctcccaccgtcagcgccgtccaat
caggctttgcctccgggtttgagtggcgtgtctcgctcgctgctcagctaccagcaaaaa
caacacctcctgcacagagggacagtgccgccgctgcagcagatgaactcgcacagtatt
tgggagaataacatgggcttcggtcctgttagtgttacacatggactcgtcacacacatg
gaggaatctccgctgttgtccatgatgaaagagcttccgaaacggattcctccaattagc
agggaggaggggcgggatttatctgaaagggtcccgccccctcgggcctcctcgcctgta
attggaagtccacctgtaagagcgatacctatcggaactccgcccaaacagcccatgagc
cacgccctgaatcagcagatccaccatcctactgcggtacatgtgagagctccagttcct
caccgttatcctcctcccttccccgagcgcctctcgcccaacaccctgctgaatatcgcc
aactctcacctgtgttgtcctccgttcccggctggagtcgctcctgtcctgtctcagata
cagcgagcccaactgctcaactctcaggtgggtccgttcccccggggtcctggtcccgct
ccacccatgctgcccggtgctgctggaggctttaggccttattttgggcagccgccccct
cctcctagagtgggccctcacggccctcatcctagccacgccccgatccgccacaacacc
acccacctccacccccagcaccgcaggatgctcacgcagaggatgcagagcagagatgtt
ggagcgagaggtggaggtggggacaggaggatcagggacccctacagtaatctaatgacc
cagaaggagaaggactgggtggcccgcattcagatgatgcagctgcagagcactgaccct
tacctggatgactactactaccagaattattatgaaaagatggagaagcgtcaggagcga
gaccgagacagcagcaggaaggagcacaccaccaaactcatcacgcctcaggtggccaag
ctcgagcacacctatcgcccagtgcagtttgccggttctctgggtaaactcaccgtgtcc
agcgtgaacaatccgaggaagatgattgatgctgtggtgacgagtcgctccgatgatgag
gagaagagagagaaacaggtgtggaataagagacggcagatcctctacacggtggagaag
atgtacagtcttctgctggaggtgcaggactttgagaagaaatttatccaaaccccagag
gaggagagagaagctctgctggagcagcacaaatccaacacactgctgctgtacaactct
ctgcgagagaaggagtgggacgacagagtgagcgatgagcagtgtctgatgatcatgtcg
gtgcgtaaagggaaacgcctcgttgctaggctcctcccattcctaacttcatcccaagct
gctgccatcgtcatgggaatcgcccgcaaccttcctgctctggccaagaaggaccggcag
gaccaggtgctgtgctggttggtggagccggttgtaggtgtggtccagtccatgtcgagc
tccgccctcactgacctgctgcaggagctgcaggggggcgacggtcactttccccgcgtg
ctgcaaaataaattcggtgtgacgctgctgtacctggtcctgagtgagggagagaggatg
cagagctctgatcctaactgtcagctcatggacgataatcgctggacggagttggtgttc
tcggtgacgagggagctgttacaggttccctcctcctccctttctcctcccctcttcact
cctcccaacctcctctcgctcttctctcgctacgtcgaccgccagaggctcgagcaactg
caagagaaactacagatcactgccttgtccaggtag
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