Ictalurus punctatus (channel catfish): 108260597
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Entry
108260597 CDS
T04658
Symbol
abca1a
Name
(RefSeq) phospholipid-transporting ATPase ABCA1a isoform X3
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu02010
ABC transporters
ipu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
108260597 (abca1a)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108260597 (abca1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ipu02000
]
108260597 (abca1a)
Transporters [BR:
ipu02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
108260597 (abca1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
AAA_22
RPA
Motif
Other DBs
NCBI-GeneID:
108260597
NCBI-ProteinID:
XP_017316481
Ensembl:
ENSIPUG00000017069
UniProt:
W5UFP9
LinkDB
All DBs
Position
29:complement(16129662..16158878)
Genome browser
AA seq
2268 aa
AA seq
DB search
MAVSTQLGLLLWKNLTYRRRQTVQLLIEIVWPLFIFFILISVRLHYPPHEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGEAPGVVGNFNDSIISRLFTDAKKILLYSQHDK
SLEGYKGLVRALKRLQSNAAGFKLKDFLRDNETLSAFLEQNATLSRHAVQQIVDANVNLE
KVLINGFGVHLRDLCNTTSLEEFVRIADPDVSEMTQKIICQSPADWLNSAESHFLSNLDF
LKPIRNDVRSNPKLVQDVSLATDTLLESLGSLAVQLVSMKSWRDMRNEILFLTGNATNSP
NHVYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHNDSDNEPASAYDNTSTPYCN
SMMKNLESTPISRMIWRALKPLLMGKILYTPDTPATRKIIHEVNKTFQELGVLRDLGGMW
EEMRVKVWDFMESSEEVDLVRTLLQNNASAQFFNDRLKGTDWRVEDISQFLTKASEDTRP
PGTGYTWRDAFNETDQAILTISRFMECVNLDKLEPVSSEERLVNKSMRLLDNRKFWAGIV
FPDMQADSSELPPNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPYEDLRYIWGGFSYLQ
DVVEHGIIRALTGSKERTGVYIQQMPYPCYVDDMFLRVMSRSMPLFMTLAWMYSVAIIIK
GIVYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISAALLVLILKVGNLLPYSDPGV
VYLFLVSFAIVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYIGFGAKV
VVSLLSPVAFGFGCEYFALFEEQGVGIQWNNLLSSPMQEDNYSLTTSISLMLIDAVLYAI
MTWYIEAVFPGQYGIPRPWYFPLTKSYWCGEKCGWTTASSTKKKENAEAVCIEEVPADLE
PGVYIENLVKVYRHGNKLAVDDLTLGFYEDQITSFLGHNGAGKTTTMSILTGLFPPTSGT
AYIMGKDIRSDLSAIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEKVKSEVEQIV
SDLGLPHKRKSRTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLK
YRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDFDL
SLSSCRTSSNTVSCSKNSLKKDDSVSESSSDAGLGSDHESETTTIDISLISNVIFKHVPS
ARLVEDLGHEITYVLPYEAAKDGGFVELFHEIDDRLVDLGISSYGISDTTLEEIFLKVAD
DNGVDAVTADGTIPRRHRRHAFGDHQSCLKPFTEDDSFDLNDSEGDPESRETDWLGVSDG
KGSYQVKGWSLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGK
YPSLELEPSMYEEQYTFISNDAPDDPHTNKLLGALTDSPAYRGRCSEDGTPGDGSCPIRD
SEWIVPEVPKTVSDMFQTGNWSMENPSPLCECSCEEKKKMLPECPLGAGGLPPPQIKTSG
TDTLQNLTGRNISDYLVKTYAQIIGKSLKNKLWVNEFRYGGFSLGARSSQGLPPSDEISK
AIAHMRARFSLERGTAPDRFLRGLSSFISGLDTNNNVKIWFNNKGWHSIAAFLNVMNNGI
LRASLPAGLNPAKFAIKAFNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPASFV
VFLIQERVNKAKHMQFISGVQPFLYWLANFLWDMCNYIVPATLVIIIFVCFQQEAYVSST
NLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVSTFVLELFGS
NEVGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLAWDMVGKNL
FAMAVEGVVFFGITVLIQYRFCIKARGFSAHLKPVSEEDEDVARERQRILGGGGQSDILE
LRQLTKVYKRKQKPAVDRLCVGIPRGECFGLLGVNGAGKTSTFKMLTGDSIITSGEAYLA
GKSVLTEINEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCEVAEWGIRKLG
LVKYVDKSAGSYSGGNMRKLSTAIALIGGPPVVFLDEPTTGMDPKARRALWNCILSIIKE
GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVGGSEPRLE
PVMELIERELPGSTLKEKHRNMLQYQLPSSLSSLARIFNILSKNKAQLHIEDYSVSQTTL
DQVFVNFAKDQSDEDHLKDISVNKSDAVVDLSQLDTFLTDAKAQETVV
NT seq
6807 nt
NT seq
+upstream
nt +downstream
nt
atggctgtctccactcagctgggattgctgctgtggaagaacttaacctaccgacggaga
cagaccgtccagctcctgattgagatcgtctggcctctcttcatcttcttcattctgatc
tccgtgcgactccactatcctccgcatgagcagcatgaatgccattttcccaacaaggcc
atgccatccgcgggcactttgccctgggtacagggaatcatctgcaacgcgaacaacccc
tgcttccggtaccccactcccggagaggctcccggtgtggtgggcaactttaacgactcc
ataatctcacggctgttcaccgacgccaagaaaatcctcctctacagccaacacgataag
agtctggaagggtacaaggggcttgtccgagctctgaagagactacagagcaacgctgca
gggtttaagttgaaggacttcctgcgcgataatgaaaccctgtctgcgttcctggagcag
aacgcgacgctgagcagacacgccgtgcagcagatcgtggatgccaacgtcaacctggaa
aaagtgctgattaatggtttcggcgtgcacctgagagatctgtgcaacacgacgtcgttg
gaggagtttgtccgcatcgccgatcctgacgtctccgagatgacgcagaaaatcatctgt
cagtcgcctgctgattggctgaacagcgcagagagccacttcctgtccaaccttgacttc
ctgaaacccatacggaacgacgtcagatccaaccctaaactggtccaggacgtgtctctg
gccactgatacgcttctggagagtctgggatctttggctgttcagctggtgagcatgaag
agttggcgtgacatgaggaatgagatccttttcctgaccggaaacgccacaaactcaccc
aatcacgtgtaccaagccgtgtcacgcatcgtgtgtggacatccagagggcggcggcctg
aagatcaaatccctcaactggtacgaagataacaactacaaggccctgttcggtaaccat
aacgacagcgacaacgagcccgcgtccgcctacgacaacacgtccactccgtactgtaac
agcatgatgaagaatctggagtcgactccgatctcacggatgatctggagagcgctgaag
cctctgctcatggggaagatcttatacacacctgatacaccggctacacgcaagattata
cacgaggtgaataagacgttccaggagctgggtgtgctgcgggatttaggaggcatgtgg
gaggagatgagggtgaaggtctgggacttcatggagagcagtgaagaagtggatcttgtg
agaactctgctccagaataacgccagcgctcagttcttcaacgacaggctgaaagggacg
gactggcgagtggaggacatttcacagttcttgactaaagcctctgaggacacgcgcccc
ccgggtacagggtacacctggagagacgcgtttaatgagacggaccaggccattctgacc
atctcacgtttcatggagtgtgtgaacttggacaagttggagccggtgtcgagcgaggag
cgtctggtgaataaatccatgagactgctggacaatcgcaagttctgggccgggatcgtg
tttccggacatgcaggccgattcctccgaacttcctcccaatgtcaactacaagattcgc
atggacatcgacaacgtggagcgtaccaataagatcaaggacgggtactgggaccctggt
ccccgtgcggacccatatgaggatctgcgctacatctggggaggattttcatacctacag
gacgttgttgaacacgggattatccgggctctgacaggaagcaaggaaagaactggcgtt
tacatccagcagatgccgtacccgtgttacgtcgatgatatgttcttgcgtgtgatgagt
cgctcgatgccgctcttcatgacgctggcctggatgtactcagtggccatcattattaaa
ggcatagtgtacgagaaagaggcgcgtctgaaggagaccatgaggattatgggattggat
aacgggatcctgtggctgagctggttcattagcagcctgatcccactgctcatcagcgcc
gccctgctggtcctcatcctgaaggtggggaaccttctgccctacagtgacccgggtgtg
gtctatctcttcctggtgtccttcgccatcgtcaccatcatgcagtgtttcctgatcagc
acgctgttctctcgggccaacctggccgccgcctgtgggggcatcatctacttcaccctg
tacctgccctatgtcctgtgtgtggcctggcaggactacattggcttcggggctaaagtg
gtcgtgagcctgttgtctccagtggcgttcggttttggctgtgagtactttgcgctgttc
gaggagcagggagtgggcattcagtggaacaacctgctgtccagccccatgcaggaggac
aactacagcctcactacctccatctcgctcatgctgatagatgccgtgctgtacgccatc
atgacgtggtatatcgaggctgtcttcccaggtcagtacggcattccccggccgtggtat
ttccccctcaccaaatcttactggtgcggagagaaatgcggctggacgacagcttcctcc
accaagaagaaagaaaacgcagaagctgtgtgcattgaggaggtaccggctgatctggaa
cccggtgtctacatcgagaatctagtgaaggtctacagacatggcaacaagctggcagtg
gatgacctcacgctgggcttctacgaggatcagattacctccttcctgggccacaatgga
gcaggaaagaccaccaccatgtccattctaactggcctgttccctcccacatctggcacc
gcttacattatgggcaaggacatccgttcagatctaagcgccatccgtcagaacctggga
gtgtgtcctcagcacaatgtcctgttcagcatgttgacggtagaagagcacatctggttc
tatgctcgtctgaaaggcctgtcagaggagaaggtgaagtccgaggtggagcagatcgtt
tcagatttaggcctccctcacaaacgcaaatctcgtactagtcagctttcaggaggaatg
caaaggaagctctctgttgctttggcatttgttggaggttcaaaggtcgtgatcctggat
gaaccgacagctggggtcgatccgtacgctcgcaggggcatctgggacctgctgctcaag
tatcggcaaggtcgaaccatcatcctctccacccaccacatggacgaggccgatattttg
ggcgaccgcattgccatcatctctcatgggaagctgtgctgtgtgggatcctccctattc
ctgaagacccagctgggcactggatactacctaactctggtcaagagggattttgacctg
tctctgagctcatgccgcacctccagcaacaccgtgtcctgttccaagaacagtctgaag
aaggatgacagcgtctctgaaagcagctctgacgccggccttggaagtgaccacgaaagt
gaaactaccaccatcgacatctccctgatctccaacgtcatcttcaagcacgttccctca
gccagactggtggaggatctgggccatgagatcacctacgtgctgccttatgaagcagcg
aaggatggtggctttgtggaactcttccacgagattgatgatcgcctcgtcgacctcggc
atctccagctacggcatttcagacaccacgcttgaggagatcttcctgaaagttgcggat
gataacggagtcgacgctgtaaccgcggatggcactattccaaggaggcaccgccggcat
gcgtttggtgaccatcagagctgtctgaagcccttcaccgaggatgacagctttgatttg
aatgattctgaaggtgatccagaatcccgggagacggactggttaggagtctctgatgga
aaaggctcgtaccaggtgaaaggttggagtctgaagaggcagcagtttgtggctttactc
tggaaacgtttcctgtatgcccgtcgctctcggaaaggattctttgctcagattgtcctt
ccagctgtgttcgtgtgcattgccctggtcttcagtctaattgtgccacctttcggaaag
tacccaagtctggagctggagcccagcatgtatgaggagcagtacaccttcatcagtaac
gacgccccggacgatccgcacactaacaagctactcggcgcgttaacggacagtccggcc
tacagggggcggtgttcagaggacgggacgcctggagacgggtcatgtccgattagagac
agtgagtggattgttcccgaagttcccaagaccgtatcggacatgtttcagaccggaaac
tggagcatggaaaacccgtcacctctctgtgagtgcagctgtgaggagaagaagaagatg
ctgcccgagtgtccactgggagcaggcggccttccaccaccacagatcaaaaccagcggt
acagacacactgcagaatctaacagggaggaacatctccgactacctggtgaaaacctac
gctcagattattggaaagagtttgaagaacaaactctgggtgaatgagttcagatatggc
ggattctcattgggcgccagaagttcacaaggcctgcccccttcggatgagatctccaag
gctatcgctcacatgcgtgctcgtttcagcttggaaagaggcacggcaccagacaggttt
ctgagaggtttatccagcttcatcagtggcctggacaccaataacaatgtcaagatctgg
ttcaataacaaaggctggcacagcatcgccgcgttcctcaacgtgatgaacaacggaatc
ctgcgtgccagcctgcccgccggtctgaaccccgccaaatttgctatcaaagcttttaac
cacccgctgaacctcactaaagagcagctctctcaggtggccttgatgaccacctcagtc
gatgtcctggtgtccatctgcgtcatcttcgccatgtccttcgtcccggccagctttgtg
gtcttcctcattcaggagagagtgaataaagccaagcacatgcagttcatcagcggagtt
cagcctttcctctactggctcgcaaactttctgtgggatatgtgtaactacatcgtccct
gcaacactcgtcatcatcatcttcgtctgcttccagcaggaagcctacgtctcgtccacc
aaccttcctgtcctcgcgctccttttactgctttatggctggtccattactcctctgatg
tacccagcatcattcttctttaagatccccagcacggcctacgtggtcctaaccagcgtc
aacatcctcattggaatcaacggcagcgtgtccaccttcgtcctggagcttttcggtagc
aatgaggtcggtggcatcaatgacattttgaaaaacgtcttcctgatcttccctcacttc
tgcctgggacgtgggctgatcgacatggtgaagaaccaggccatggcggatgctctggag
aggttcggtgagaatcggttccgttctcctctggcatgggacatggtggggaagaacctc
tttgctatggcagtggaaggcgtggtcttcttcggcattacagtgctcatacagtatcgc
ttctgcatcaaggccaggggctttagtgctcacctgaagccagtcagcgaggaggacgag
gacgtggccagggagaggcaaaggatcctgggtggaggtggacagagtgacatcctggag
ctcagacagctgaccaaggtgtataagaggaagcagaagccagcggtggacagactgtgt
gtgggaattccacgtggagagtgttttggattgcttggtgtgaacggcgctggaaaaacg
agtaccttcaagatgctcactggagattcgatcatcacgagcggagaggcttatttagct
ggcaagagcgtgctgacggagatcaatgaggtgcatcagaacatgggctactgtcctcag
tttgacgccatcaacgacctgctgaccggccgagagcacctggagttttacgccattcta
cgtggagtgcccgaaaaagaagtgtgcgaggtggcagagtggggaatccgtaaactgggt
ctggtgaagtatgtggacaaatcggcgggaagctacagcggaggaaacatgcgcaaactc
tccacggccatcgctctgattggaggcccacccgtggtgttcctggacgaacccacgacc
ggtatggacccgaaagcacgacgtgctctgtggaactgtatcctcagcatcattaaagag
ggacggtctgtcgttctcacctcacacagtatggaggagtgtgaggctctgtgtactcgc
atggccatcatggtcaatggcaggttccgttgcctgggcagtgttcagcatctgaagaac
aggttcggtgatggctacaccatcatcctgcgcgtgggagggtccgagcctcgtctagag
ccggtgatggagctgattgagcgcgagctacccggcagcaccctgaaggagaaacacagg
aacatgctgcagtaccagcttccatcatctctctcctcactggctcggatcttcaacatc
ctgtccaagaacaaagcgcagctccacatcgaggactactccgtctcacagaccacgcta
gaccaagtttttgttaatttcgccaaggaccaaagtgatgaggaccatctcaaagacatt
tctgtaaacaagagcgatgccgtggtggacctttcacagctggacaccttcctcacggac
gctaaagcgcaggagacggtggtgtga
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integrated database retrieval system
