Ictalurus punctatus (channel catfish): 108260703
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Entry
108260703 CDS
T04658
Name
(RefSeq) FERM and PDZ domain-containing protein 1 isoform X1
KO
K23954
FERM and PDZ domain-containing protein 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
108260703
Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
Other domain-containing proteins
FERM domain-containing proteins
108260703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FERM_M
PDZ
PDZ_6
FERM_C_FAK1
FERM_f0
PDZ_2
SNX17-31_F2_FERM
Motif
Other DBs
NCBI-GeneID:
108260703
NCBI-ProteinID:
XP_047008378
UniProt:
A0A2D0QEA8
LinkDB
All DBs
Position
29:complement(1980368..1996587)
Genome browser
AA seq
1690 aa
AA seq
DB search
MEDRDRSRSPSRRTSKVEQVVGRWLRRSRESTSRERVLDDDGRGPDASPQEQRSCPVRVT
VQIPLDLDLESHGFTVSTHTPAQVEEVVAGGPADGKLFPGDQLVKINNVAVDDLSTEQAA
DVIKECQDTITMTVLRIAVGPKSSFITPEKRAKLKSNPVKVRFAEEVVVNGHSQGNSLLF
LPNVLKVYLENGQTKAFKFEPKTTVKDIVMTLKEKLSISRIEHFSLVLEQQYSIAKLFLL
HEDEPIQEVVQKREPHDYRCLFRVCFMPKYPQELLEEDPVAFEYLYLQSVSDVLQERFAV
EMKCNTAIRLAALHIQERLASTGQSPKTPLKTVVKDWGIESFVSSTLLKNMREKDLRKAI
SLHMKKILLQEHKHKAMTVNQARLHYLSEMSELKSYGGKSFSATLMLQDRESTVSLLVGA
QYGVSQVINHKLSIMTTLTDFSSITRVELVTESERVSLVKIYMQDIKPITLLLESVPAKD
LSCLVAGYCKVFIDPQICVFPWTAESKGHRISAEEGYVSRCCSDSEDSEVDALLVHACSS
PTQADANITSVAGQEEEKTNAEEEEDAEDKSEKESVENGAGETKKVRLEDQADSVHAVEG
EAVGPDAENHTLETEEEEPPCVIIVEDPPSEASDSFQTDSRFVTSMSSDSMDALEEDDFL
TYFSTNSVSQLSVRDHYLHVDTRTPCPSQPDCQDGDFNEEPCSIDFPDDEFLCLAALSNI
AECLPSPTEASEDEYSEQGDDDEQEAPEDVFESAEPARGEAVFTFNQGDVRCYYNICSNV
TPDSGHVHARTASAHHTREENKAEAERESEPVPILLPPPGFGDSSSDDEFFDAQEKFIPE
EPLSAPMPKGRSRDSSVTKRTLSLSHIGTGAGERKKREGESKNRERKDQEKLKTETKNEV
PRFRKRSRKRRSFMETEYTSLVSFPEKERTKTYNRIPNHWLGRRHLSESHLGGPSNRSSC
PTVSSLTNAEGEPAEMESKPITQSNPSHHLLHGNKISKASQRKQQVILMEPDSMEFKSVT
EIMSTASPSIVAVRTSTEPKVKSNVTSRADGLEEESAVERLLDGHLFFGTPSSDDALPVK
INDQESLIEGPFQEPLLRKKSCSLPRLDQTPASSSLSLKVPTISFTQNPGMDRLDVDSLE
MGTQKCSVGPTERTRRSQSMSAVSESSGLFCLTRHLCPQTEPVVRTAEPHSGDTDSSGDP
FTQEPSSTVSPGPQCSSRILGRLSTSAMRGKTQDLPLYMSRSQEALTSDSSLVDDAKQAR
RFSENMTTTQVKSEELTEVVEEFGEVDRNNSYVEREQKSEPEELSWTLKSPSGLKSVDPV
KIGPSSLVVTTQKPNGPWGVVTSQEISRLQAGSSRRVGAHSQPLTHYESNPTNTQPQALP
GPNLHAKPDLTCSSVLASVCETVIESAETPMEVCGCQSAYTKCFSSVLDNGSFDDELTVY
EFSCRTQQSMRDRVVAVTSIPSSLSGSSSSFSPSSPLPAFSRVVLPPSSSAELGPLLSPL
DCFLSDPHGDAITALLAQHYPLPPTGFLALQRDVDTLLAVLDGATKEQDCIQEHPRDTCA
DHFSENKRRLHVEARGFLAGCQQVVKAGQTPAETLQALADSFHSLVQLTAVCLSFSSCQR
CQERHSQTLSGLADVAQTYQEFARAAERLGMAAERRTCHELSIKLLARQCTALTTSVFCL
TQLFRTLTAL
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atggaggatcgggaccgcagccgctctccgtcacgcaggaccagcaaagtagagcaggta
gtagggcgctggcttcgtcgttccagagagtccacgagcagagagcgcgtgttggacgac
gacgggcgaggacccgatgccagtcctcaggaacagagaagctgtccagtccgagtgacc
gttcagatcccactggacctcgacctcgagtcccacggcttcactgtgtccacacacact
ccagcgcaggtggaggaggtcgtcgcagggggtcctgcagacggcaaactcttccccggt
gaccagcttgtgaaaatcaacaacgtcgctgtcgatgatctgtctacagagcaagctgcc
gacgttatcaaggagtgccaggacaccataacaatgacagtcctgagaatagcagtgggg
ccgaagtcgtccttcataaccccagagaagagggctaagctaaaatccaacccggttaag
gtgcgcttcgccgaggaagtggtcgttaacggccactcgcagggtaactctctgctcttc
ctgcccaacgtcctgaaggtctatttagagaacggacaaaccaaagccttcaaattcgag
cccaagaccaccgttaaggacattgtgatgaccctgaaagagaagctatcgatatcccgc
atcgagcacttctctctggtgctcgagcaacagtacagcatcgccaaactctttctgctg
cacgaggacgagccgattcaagaagtggtccagaagagagagcctcatgactacaggtgt
ctgtttcgtgtctgcttcatgcccaaatatccacaagagctgctggaggaggaccccgta
gccttcgagtatctctacttacagagcgtgagcgatgtccttcaggagaggtttgctgtg
gagatgaagtgtaacacagcgatcagactggcagctctacacatacaggagagactcgcc
agcaccggccagtctcctaaaacaccgctaaagaccgtcgtgaaggactggggtatcgaa
agctttgtctccagcaccctgctgaagaacatgagagagaaggacttgagaaaagccatc
agtttacacatgaagaagatccttttacaggaacacaagcataaggcgatgacagtaaac
caggccagactacactacctgagcgagatgtctgaactcaagtcttacgggggaaaatcc
tttagcgccaccctgatgctgcaagacagggagtctacggtgagcctgttggtgggggca
cagtacggggtgagtcaggtgatcaatcacaagctgagcatcatgaccacactgacggac
ttcagcagcatcaccagggtggagctcgtaacggagtcggaacgcgtcagcctggtcaag
atctacatgcaggatataaagcccataaccttgctgttggagtccgtgcctgctaaggat
ttgtcgtgcctggtagctggttactgcaaagtattcatagatcctcaaatctgcgtgttc
ccctggacagccgagtcaaagggccaccgtatatctgcagaagaaggttatgtatcaaga
tgctgcagtgactccgaagactccgaagtggatgctctgcttgttcatgcttgttcaagt
cctacccaggctgacgcaaacatcacttcggtcgcaggacaggaggaagaaaagaccaac
gcagaagaagaggaggatgcggaagacaagagtgaaaaagaaagcgtggagaacggtgct
ggagaaacaaagaaagtaagactagaggatcaggctgattccgtgcatgccgttgaagga
gaggcagtaggacccgatgcggaaaaccacacgttggaaaccgaggaggaggagccacca
tgcgtcatcattgtggaggacccaccatcagaagcatcggattcatttcagacagactcg
cgcttcgtaaccagcatgtccagcgactccatggacgctttagaggaggacgactttttg
acctacttctccactaacagcgtcagccagctgagcgttagagaccattacctccatgtc
gatactcgtacaccgtgtccgagtcagccggattgccaagacggcgatttcaacgaagaa
ccatgttccatcgatttccccgacgacgaattcttatgtcttgccgccctgtctaacatc
gcagaatgtctacccagtcccaccgaggccagtgaggacgaatattcggaacagggagac
gacgatgaacaagaagcaccagaggacgtcttcgaaagcgccgagcctgctcgtggagaa
gctgtgttcacgttcaaccagggcgatgtacgatgttactacaacatctgctcgaatgta
acgcccgatagcggtcacgtccatgcaagaacagcttctgctcaccacactcgtgaagaa
aacaaagcagaggcggagagggagtccgagccggtgcccatccttctgcctcccccaggt
tttggggacagtagctcagacgatgagttctttgacgcccaggagaaattcattcctgag
gaacctttgtcagcaccaatgcctaaaggacgttctagagattcgagcgtcacgaagcgt
actctgagcctaagccacatcggcaccggtgccggcgaacgaaagaagcgagaaggagag
agtaaaaacagagagagaaaagatcaagaaaaactaaagacggagacgaaaaacgaggtt
cccaggttccgcaagagaagcagaaagcgccgttccttcatggaaaccgagtacacgtct
ttagtatcgtttcctgaaaaagaacgaacgaaaacgtacaaccgaatcccaaatcattgg
ttgggacgtaggcatctcagtgaaagccacctcggtggaccgtcaaatcgaagctcctgc
cccacggtctcatctctaacaaatgctgagggcgagccagcagaaatggaatcgaaaccc
atcacccagtccaacccgagtcaccatctcctgcacggtaacaaaatcagcaaggcaagt
cagcggaaacagcaggttatactgatggaaccagattccatggagtttaagtctgtcacc
gaaatcatgtctactgcctcgccttctattgtcgcagtacgcacttctacagagcctaaa
gtaaaatccaacgtcacgagcagagctgatggacttgaagaagaaagtgcagttgaaagg
ttgcttgacggtcacttgttttttggcactcctagcagtgacgatgctttacctgtgaaa
ataaacgaccaagaatccctgatagaaggtccatttcaggaacccttgctgaggaaaaag
agctgttcacttccacgattagaccaaacacctgcatctagctcgctttctttgaaagtc
ccaaccatatccttcacccagaaccctggcatggacagacttgatgtagacagtctggaa
atgggcactcagaaatgttcagtagggccaacagagagaacaagaagaagtcagagcatg
tctgcagtatctgagagcagcggtctcttttgtttaacgaggcacctctgtcctcagacg
gaacctgtagtccgcacagcagaaccacattctggtgacacagacagttctggcgacccg
ttcacccaagaaccatcctccactgtatcccctgggccgcagtgttcttcacgcatcctt
ggtcgcctctctacttcagcaatgcggggaaagacccaggacttgcccctgtacatgtct
cgttcccaggaagcgctaaccagtgacagtagtcttgtagatgacgccaaacaagcaagg
agattttctgaaaatatgaccacaactcaggtaaagtctgaagagctcacggaggtggtt
gaagagtttggggaagtagatcgcaataattcttacgtggaaagagaacagaaaagtgaa
cccgaagaactctcttggactctgaagtcaccttcgggcctgaaatcggttgaccctgtc
aaaatcggcccttcgtctcttgtggttacgacgcagaaacctaatggaccgtggggtgtg
gtgacgtcacaagagatcagcagattacaagcaggaagcagccgtcgtgtgggtgcacac
tcacaacctctcacacattacgaatccaatcccaccaacacccagccacaggctctgcct
ggcccaaatctacacgcaaagcccgaccttacttgcagctcagtgcttgcctcagtgtgt
gagacagtaatcgagagtgctgaaacaccgatggaggtttgcggctgccaatcagcatac
accaaatgcttcagcagcgtcttggacaatgggagttttgatgacgaactgactgtctat
gagttctcctgcaggacacagcaaagcatgcgtgaccgagtagtggcggtgacatctatc
ccttcatccctttctggttcctcttcctctttttcaccatcctcaccccttccagctttc
tctcgtgtggtcctgccgccgtcctcgtccgcagaactcggccctcttctgtcgcccctg
gactgcttcctctctgatcctcatggagacgctatcaccgccttactggcccaacattac
cccttaccaccgacaggcttcctggctctgcagagagatgttgacacactattagcagtc
ctggatggtgccacgaaggaacaagattgcatccaagagcatcccagagacacttgcgca
gaccacttttctgaaaacaagcgcaggctgcatgtggaggcgcgagggtttctggctggc
tgtcagcaggtagtgaaggccgggcagaccccagcggagacgctgcaagctctagcggac
agttttcactcactggtgcagctgacggccgtgtgcctgagtttctctagctgccagagg
tgccaggagcgccactctcagaccttgtcgggacttgcagacgttgcgcagacctatcag
gagtttgcacgggcggcagagcgcttgggcatggccgcggaaaggaggacatgccatgaa
ctcagtattaaactcctggcccgccagtgtaccgcgctaacaacctcagtcttctgccta
acacagctattccgtaccctcacggccctttga
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integrated database retrieval system
