Ictalurus punctatus (channel catfish): 108260805
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Entry
108260805 CDS
T04658
Symbol
si:cabz01101003.1
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase CYLD isoform X1
KO
K08601
ubiquitin carboxyl-terminal hydrolase CYLD [EC:
3.4.19.12
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04217
Necroptosis
ipu04622
RIG-I-like receptor signaling pathway
ipu04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
108260805 (si:cabz01101003.1)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
108260805 (si:cabz01101003.1)
04625 C-type lectin receptor signaling pathway
108260805 (si:cabz01101003.1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ipu01002
]
108260805 (si:cabz01101003.1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108260805 (si:cabz01101003.1)
Enzymes [BR:
ipu01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108260805 (si:cabz01101003.1)
Peptidases and inhibitors [BR:
ipu01002
]
Cysteine peptidases
Family C67
108260805 (si:cabz01101003.1)
Ubiquitin system [BR:
ipu04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
108260805 (si:cabz01101003.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAP_GLY
UCH
Motif
Other DBs
NCBI-GeneID:
108260805
NCBI-ProteinID:
XP_017316890
Ensembl:
ENSIPUG00000009996
UniProt:
A0A2D0QHE7
LinkDB
All DBs
Position
29:complement(9270621..9284999)
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AA seq
954 aa
AA seq
DB search
MSAVTPQNRRRRPSKMYILTSDHKVQDHLDGTIRLQRGNLCQEQEGGGERVGRGDFLWVK
VVDNGTMVKLDKHLLNEISTEQAGLLEPITDLELRFKLLSKPHRLTRLASLPLGTPVLVR
CGQSVDLADAELRYRGPLMRGSGAVYFGVQLKGSAAGRGNGNGSYKGHQLFTCPEQCALF
VSVSDITTHRFTRSSSSGDNDPQQTEINRPNPNSQSSSNVPNPVSVLARSAESVPANTLL
QVGQRACFAQDKVYHWGTVQYCGQLPGRTSSGGVYVGVLLDNPVGNWNGYYKSYKLCSIP
SPEYGHLLPLSKVVAETRSERTTPEIPPLPSSKNPLQPPSPTHSKHLPQTTIPTNSSHNP
RLLIEPSMLAMAKSALQPPAPSNASKVPLKPPPATIVKSALKPPPVPPIKPQALSPSVDQ
LHTSNGFHNPPSPLIPEKAEANMWLEVGSMVEVNDPPLFGVIRWIGYIDGISEPVAGIEL
DQELTAATDGNYLGERHFRCPPNKGLFIKLRNCRRDSRFPVPEAPINQVERCNSIAFAEW
GSKRVEENTPPLLGQEARHLYEGFKKGIQGHLNSCYLDASLFSLFSCCSSVDWVLFWPCN
EDGHRSKDAQELLRCEIVNPLRRFGYVCASKTMALRKLLEAETTDAGFTNEEKDPEEFLN
KLFQLLRVEPLLKIRSSSQEPQECHIYQLFPPTLPCPSSPIRSPLSPSLSPCLSPIPLSS
PSVGLMRVASVQTLLESSFMHSGLKFTEAPSCLPLLMPRFGKEFKMFDAILPSLTLDITD
LLDETLRQCSICQSVAEWECSQCYEDLDITPGQLKQFCNTCNAQVHAHKKRQMHKPIKVR
MPKGTWEGPVHGARQQLTLFAVTCIETSHYVSFVKHGPLPTDWLFFDSMADREGGENGFN
VPQVRACPEVGRYLSLSQVELSRLDSAFLKEPVRRLLCDAYMCLYHCPELSLYK
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccgtcacgccacaaaacaggaggcgacgcccctctaaaatgtacatactgacg
tccgaccacaaagtacaagaccacctggatggtaccattcggctgcagaggggtaatctg
tgtcaggagcaagagggaggaggggagcgcgttggaagaggggactttttatgggtaaag
gttgtagacaatggaactatggtgaagcttgataagcacttattaaatgaaatatctact
gagcaggctggcttgctggagcctatcactgaccttgaattacgcttcaaactgctctcc
aaacctcaccggcttaccagattggccagtttgcccctggggacacccgtgctagtgcgg
tgtggccagtcagtagacctggctgatgctgagcttcgttatcgtgggcccttgatgcga
ggaagcggagccgtgtattttggggtccaactaaaaggatctgcagcagggaggggcaac
ggtaatggaagctacaaaggacaccagcttttcacatgccctgaacagtgtgcccttttt
gtgtcagtcagcgatatcacaacacaccgatttacccgaagcagcagttctggtgataat
gatcctcaacaaactgaaataaacagacccaacccgaacagccagagttctagtaatgtc
ccaaatccagttagtgtcttagcacgttcagcagaatctgtgccagctaatactctgctg
caggttgggcagagggcctgcttcgcccaagacaaggtgtatcattggggcacggtgcag
tactgtgggcagcttcctggccgtacgtcatcaggaggagtgtatgtgggagttttgctg
gacaacccagtaggaaactggaatggttactataagagctacaagctgtgctccattccg
tctcctgaatacggccaccttcttcccctctccaaagtggttgcagaaacgaggtcagag
cgcacaactccagaaatccctccacttccttcctccaaaaacccccttcagccgccttca
cccacacatagcaagcaccttccacagacgacaatacccaccaattccagccacaaccct
agactgttgatagagccttccatgctagccatggctaaatccgctctacaacctccagct
ccatcaaatgcttcaaaagttcctttaaaacctcctcctgccacgattgttaaatctgca
ctcaaaccacctcctgttccacctattaagccacaagccctttcaccctccgttgaccag
ctgcatacttcaaatgggtttcataatccaccctctccactcattccagagaaagcagag
gctaatatgtggttagaggttgggtctatggtcgaggtgaatgacccaccacttttcgga
gtcattcggtggattggatacattgatggaatttcagaaccagtagctggcattgaactg
gaccaggagttgaccgctgccacggacggcaactaccttggggagcgtcatttccgttgc
ccccctaacaaggggctgttcatcaaactacgtaactgtaggcgagactccagatttcct
gtccctgaggcgccgatcaatcaagtggagcgctgcaattcgattgcatttgcagaatgg
ggcagtaagcgtgtggaagagaacacaccacccttgttgggtcaggaggctcggcatttg
tacgaaggctttaagaaaggcatccagggccatctcaactcttgctacctggatgcatca
ctcttcagtctgttctcgtgctgcagttcagtcgactgggttttgttttggccctgcaac
gaagatggtcaccgaagcaaagatgctcaggaactactgcgctgtgaaattgtcaatcct
ttacgcaggtttggatacgtgtgtgccagtaagactatggcattacggaagcttctggaa
gctgagactacagatgcaggctttactaatgaagagaaagatcctgaagaattcctcaac
aagcttttccagctcctccgggtggagccacttctgaagattagatcttcaagccaggag
ccacaggaatgccacatttatcaacttttccctcctacgcttccctgtccatcctcacct
attcgttctcctctctcgccctctctctcaccctgtctctccccaatccctctgtcctca
ccctcagttggactcatgagggttgccagtgtgcagacactgctggaatcctccttcatg
cattctgggcttaaattcacagaggctccatcctgtcttcctctgctcatgccacgcttt
ggtaaagagtttaagatgtttgacgccattctgccatccctcacactcgacatcactgac
cttctggatgagacgcttcgacaatgtagtatatgtcagtcggtggcagagtgggagtgt
tcacagtgttatgaggatctggacatcacacctggccagttaaaacagttttgcaacacc
tgcaatgcacaagttcacgcccacaaaaagcgccagatgcacaaacccatcaaggtcaga
atgcccaagggcacatgggagggaccggttcatggagctcgccagcaattaactctcttc
gctgtgacgtgtattgagaccagtcactatgtgagctttgtcaagcacgggcccctccct
accgactggctcttcttcgacagtatggctgatagagagggaggggagaacggcttcaac
gtgccacaggtgagggcgtgtccggaggtgggacgctacctgagcctgtcacaggtggag
ctcagccgcttagactccgccttcctaaaagagccggtccgaagattgctctgcgatgcc
tacatgtgtctttatcactgtcctgaactgagcctgtataagtga
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