KEGG   Ictalurus punctatus (channel catfish): 108260805
Entry
108260805         CDS       T04658                                 
Symbol
si:cabz01101003.1
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase CYLD isoform X1
  KO
K08601  ubiquitin carboxyl-terminal hydrolase CYLD [EC:3.4.19.12]
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu04217  Necroptosis
ipu04622  RIG-I-like receptor signaling pathway
ipu04625  C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04217 Necroptosis
    108260805 (si:cabz01101003.1)
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    108260805 (si:cabz01101003.1)
   04625 C-type lectin receptor signaling pathway
    108260805 (si:cabz01101003.1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:ipu01002]
    108260805 (si:cabz01101003.1)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ipu04121]
    108260805 (si:cabz01101003.1)
Enzymes [BR:ipu01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     108260805 (si:cabz01101003.1)
Peptidases and inhibitors [BR:ipu01002]
 Cysteine peptidases
  Family C67
   108260805 (si:cabz01101003.1)
Ubiquitin system [BR:ipu04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    108260805 (si:cabz01101003.1)
SSDB
Motif
Pfam: CAP_GLY UCH
Other DBs
NCBI-GeneID: 108260805
NCBI-ProteinID: XP_017316890
Ensembl: ENSIPUG00000009996
UniProt: A0A2D0QHE7
LinkDB
Position
29:complement(9270621..9284999)
AA seq 954 aa
MSAVTPQNRRRRPSKMYILTSDHKVQDHLDGTIRLQRGNLCQEQEGGGERVGRGDFLWVK
VVDNGTMVKLDKHLLNEISTEQAGLLEPITDLELRFKLLSKPHRLTRLASLPLGTPVLVR
CGQSVDLADAELRYRGPLMRGSGAVYFGVQLKGSAAGRGNGNGSYKGHQLFTCPEQCALF
VSVSDITTHRFTRSSSSGDNDPQQTEINRPNPNSQSSSNVPNPVSVLARSAESVPANTLL
QVGQRACFAQDKVYHWGTVQYCGQLPGRTSSGGVYVGVLLDNPVGNWNGYYKSYKLCSIP
SPEYGHLLPLSKVVAETRSERTTPEIPPLPSSKNPLQPPSPTHSKHLPQTTIPTNSSHNP
RLLIEPSMLAMAKSALQPPAPSNASKVPLKPPPATIVKSALKPPPVPPIKPQALSPSVDQ
LHTSNGFHNPPSPLIPEKAEANMWLEVGSMVEVNDPPLFGVIRWIGYIDGISEPVAGIEL
DQELTAATDGNYLGERHFRCPPNKGLFIKLRNCRRDSRFPVPEAPINQVERCNSIAFAEW
GSKRVEENTPPLLGQEARHLYEGFKKGIQGHLNSCYLDASLFSLFSCCSSVDWVLFWPCN
EDGHRSKDAQELLRCEIVNPLRRFGYVCASKTMALRKLLEAETTDAGFTNEEKDPEEFLN
KLFQLLRVEPLLKIRSSSQEPQECHIYQLFPPTLPCPSSPIRSPLSPSLSPCLSPIPLSS
PSVGLMRVASVQTLLESSFMHSGLKFTEAPSCLPLLMPRFGKEFKMFDAILPSLTLDITD
LLDETLRQCSICQSVAEWECSQCYEDLDITPGQLKQFCNTCNAQVHAHKKRQMHKPIKVR
MPKGTWEGPVHGARQQLTLFAVTCIETSHYVSFVKHGPLPTDWLFFDSMADREGGENGFN
VPQVRACPEVGRYLSLSQVELSRLDSAFLKEPVRRLLCDAYMCLYHCPELSLYK
NT seq 2865 nt   +upstreamnt  +downstreamnt
atgtcggccgtcacgccacaaaacaggaggcgacgcccctctaaaatgtacatactgacg
tccgaccacaaagtacaagaccacctggatggtaccattcggctgcagaggggtaatctg
tgtcaggagcaagagggaggaggggagcgcgttggaagaggggactttttatgggtaaag
gttgtagacaatggaactatggtgaagcttgataagcacttattaaatgaaatatctact
gagcaggctggcttgctggagcctatcactgaccttgaattacgcttcaaactgctctcc
aaacctcaccggcttaccagattggccagtttgcccctggggacacccgtgctagtgcgg
tgtggccagtcagtagacctggctgatgctgagcttcgttatcgtgggcccttgatgcga
ggaagcggagccgtgtattttggggtccaactaaaaggatctgcagcagggaggggcaac
ggtaatggaagctacaaaggacaccagcttttcacatgccctgaacagtgtgcccttttt
gtgtcagtcagcgatatcacaacacaccgatttacccgaagcagcagttctggtgataat
gatcctcaacaaactgaaataaacagacccaacccgaacagccagagttctagtaatgtc
ccaaatccagttagtgtcttagcacgttcagcagaatctgtgccagctaatactctgctg
caggttgggcagagggcctgcttcgcccaagacaaggtgtatcattggggcacggtgcag
tactgtgggcagcttcctggccgtacgtcatcaggaggagtgtatgtgggagttttgctg
gacaacccagtaggaaactggaatggttactataagagctacaagctgtgctccattccg
tctcctgaatacggccaccttcttcccctctccaaagtggttgcagaaacgaggtcagag
cgcacaactccagaaatccctccacttccttcctccaaaaacccccttcagccgccttca
cccacacatagcaagcaccttccacagacgacaatacccaccaattccagccacaaccct
agactgttgatagagccttccatgctagccatggctaaatccgctctacaacctccagct
ccatcaaatgcttcaaaagttcctttaaaacctcctcctgccacgattgttaaatctgca
ctcaaaccacctcctgttccacctattaagccacaagccctttcaccctccgttgaccag
ctgcatacttcaaatgggtttcataatccaccctctccactcattccagagaaagcagag
gctaatatgtggttagaggttgggtctatggtcgaggtgaatgacccaccacttttcgga
gtcattcggtggattggatacattgatggaatttcagaaccagtagctggcattgaactg
gaccaggagttgaccgctgccacggacggcaactaccttggggagcgtcatttccgttgc
ccccctaacaaggggctgttcatcaaactacgtaactgtaggcgagactccagatttcct
gtccctgaggcgccgatcaatcaagtggagcgctgcaattcgattgcatttgcagaatgg
ggcagtaagcgtgtggaagagaacacaccacccttgttgggtcaggaggctcggcatttg
tacgaaggctttaagaaaggcatccagggccatctcaactcttgctacctggatgcatca
ctcttcagtctgttctcgtgctgcagttcagtcgactgggttttgttttggccctgcaac
gaagatggtcaccgaagcaaagatgctcaggaactactgcgctgtgaaattgtcaatcct
ttacgcaggtttggatacgtgtgtgccagtaagactatggcattacggaagcttctggaa
gctgagactacagatgcaggctttactaatgaagagaaagatcctgaagaattcctcaac
aagcttttccagctcctccgggtggagccacttctgaagattagatcttcaagccaggag
ccacaggaatgccacatttatcaacttttccctcctacgcttccctgtccatcctcacct
attcgttctcctctctcgccctctctctcaccctgtctctccccaatccctctgtcctca
ccctcagttggactcatgagggttgccagtgtgcagacactgctggaatcctccttcatg
cattctgggcttaaattcacagaggctccatcctgtcttcctctgctcatgccacgcttt
ggtaaagagtttaagatgtttgacgccattctgccatccctcacactcgacatcactgac
cttctggatgagacgcttcgacaatgtagtatatgtcagtcggtggcagagtgggagtgt
tcacagtgttatgaggatctggacatcacacctggccagttaaaacagttttgcaacacc
tgcaatgcacaagttcacgcccacaaaaagcgccagatgcacaaacccatcaaggtcaga
atgcccaagggcacatgggagggaccggttcatggagctcgccagcaattaactctcttc
gctgtgacgtgtattgagaccagtcactatgtgagctttgtcaagcacgggcccctccct
accgactggctcttcttcgacagtatggctgatagagagggaggggagaacggcttcaac
gtgccacaggtgagggcgtgtccggaggtgggacgctacctgagcctgtcacaggtggag
ctcagccgcttagactccgccttcctaaaagagccggtccgaagattgctctgcgatgcc
tacatgtgtctttatcactgtcctgaactgagcctgtataagtga

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