Ictalurus punctatus (channel catfish): 108260863
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Entry
108260863 CDS
T04658
Name
(RefSeq) nuclear valosin-containing protein-like
KO
K14571
ribosome biogenesis ATPase
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108260863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ipu03009
]
108260863
Ribosome biogenesis [BR:
ipu03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
108260863
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
Nucleolin_bd
AAA_lid_3
RuvB_N
AAA_16
AAA_2
AAA_22
AAA_5
AAA_14
AAA_33
TIP49
NPHP3_N
Vps4_C
RNA_helicase
AAA_28
Mg_chelatase
AAA_17
nSTAND3
AAA_18
TsaE
NACHT
Zeta_toxin
Rad17
nSTAND_NTPase5
Viral_helicase1
AAA_3
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
108260863
NCBI-ProteinID:
XP_017317011
Ensembl:
ENSIPUG00000006435
UniProt:
W5UJS9
LinkDB
All DBs
Position
29:complement(6621297..6663383)
Genome browser
AA seq
872 aa
AA seq
DB search
MKNRCSGIDQRLKQRVEQYLKSNNSQYVDVVEMAADLQRQYRLDYGRRNRTAFRIQVEKV
HKIICNDSGLSALEDKHLAKRARRSKEDDGEDSSVLSDSTDSEADLSENENTNHMNNSLM
SLYCKGNPKNGTPSREQDASSPNPACQKGSSAEGSGSSCTLYHSTTTVSSGGWFIDKTGR
KDRENMLIDLCEESASPAVKKDTGLSMLEPEKKPKKSKKKEKRKPQSEGESKDADIEESI
MSKKARPKPPELQHSTVKFEDVGGNEETLTDLCKLLIHMRHPDVYQQLGVVPPRGFLLHG
PPGCGKTLLAQAVAGEMELPMLKVSAPELVSGISGDSEQKLRELFEQAVSGAPCILFIDE
IDAITPKREVASKDMERRIVAQLLTCMDDLNSLRIPAQVLVIGATNRPDSLDPALRRAGR
FDREICLGIPDEGARLKILNTLCRKLKLPADFDFAQLARLTPGYVGADLMALCREAAMTA
VNRVLLQQLEAGHMCQNTDVQNDDSAKSQDMSISSDVVEESGQASDDLSAPQGELQQLLS
LLRNSKSLSKEQLADLCIVMDDFRESLARVQPSAKREGFATVPDVTWDDIGALQDIREEL
TMAILAPVRSPEEFKALGLSAPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN
MYVGESERAVRQVFQRGRNSAPCVIFFDEIDALCPRRSGHESGATVRVVNQLLTEMDGLE
TRRQVFIMAATNRPDIIDPAVLRPGRLDKTLYVGLPPPEDRHAILLTITKGGTKPCLELD
VNLEEIAHDKRCDCFTGADLSALVREACVNALRAHLYSQTALAHTGHTFSSSSVKGIRVS
RQNFEEALKKVRPSVSKKDQLMYEKLRESLTR
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacagatgtagtggtatagaccagcgactcaaacagagagttgaacagtacctg
aaatccaacaacagtcagtatgttgatgttgttgaaatggccgcagaccttcagcgacag
tacaggctagattatggcagaaggaacagaacagcttttaggatacaagtggaaaaagtg
cacaagataatatgtaatgattctgggctctcagcactagaagacaaacacttggctaaa
agagcaagacgcagtaaagaggatgatggtgaggacagcagtgtgctgagtgacagcaca
gacagcgaggcagatttatctgaaaatgagaacactaatcacatgaacaactcgctgatg
tccctgtattgcaaggggaatcccaagaatggaaccccttcaagggagcaggatgccagt
agcccaaatccagcctgtcagaagggttcatcagctgagggcagcggtagcagttgtacc
ctttatcactccaccaccactgtgtcttcaggtggctggttcattgataagacaggaaga
aaagatcgggagaacatgctgatcgacctgtgtgaggagtcagccagccctgctgtcaaa
aaagacactggtttgtcaatgctggagcctgaaaagaagccaaagaagagcaagaagaaa
gaaaagagaaaaccccagagtgaaggagaaagtaaagacgcagacattgaggaaagcata
atgtcaaaaaaagcccggcccaaacctcccgaacttcaacattccactgtgaagtttgaa
gacgttggtggtaatgaagaaactctgacggatttgtgtaaattgctcatccatatgcgt
catcctgatgtgtaccagcagctaggagtagtgcctccacgaggtttccttcttcatggg
ccgcctggttgtgggaaaaccctccttgcccaagctgttgctggggaaatggagttgccc
atgttgaaggtctctgctccagagctggtgtcaggcatttcaggggactcggagcagaaa
ctacgtgagctgtttgagcaagctgtgagcggtgctccctgcattctattcattgatgag
attgatgccatcactccaaagagggaggtggcctccaaggacatggagagacggattgtt
gctcagttactcacctgcatggatgacttgaattccttacgtataccagcacaggtcttg
gttattggagccaccaaccggcctgattctttagatcctgcgttgagaagagcaggacgt
tttgacagagaaatctgtctgggcattccagatgaaggagcacgtctgaaaattcttaat
actctttgtcggaagcttaagttgccagcagattttgactttgcacagctggcacgtctc
acacctgggtatgttggtgcggatctgatggcactgtgccgtgaggcagccatgactgct
gttaaccgggtcctgctgcagcagcttgaggctggccacatgtgtcagaacactgatgtc
cagaatgatgacagtgcaaagtcccaagatatgagcatatctagtgatgtggtagaagag
agtggacaggcttctgatgatttaagtgcaccgcagggggagctacaacagctgctttct
ctgctgaggaacagcaagtctctgagcaaggaacagcttgctgatctctgcatcgtcatg
gatgacttcagggagtcactggcacgagtccaaccatctgccaagcgtgaaggcttcgcc
acagtgcctgatgtcacctgggatgatatcggtgcactgcaagacattcgcgaggaactc
actatggccatcttggctcctgtacgtagtccagaggagttcaaagctctgggtttgagt
gcccctgcaggagtgctgcttgctggacctccaggctgtggaaagacccttcttgcaaaa
gctgttgccaatgagtctggtttaaactttatatccgtcaagggccccgagctactgaat
atgtatgttggtgaaagtgagcgtgcagttcgccaggtgttccagagaggacgaaactcg
gccccgtgtgtgatctttttcgatgagattgatgccctttgccctcgacgttctggccat
gagtctggagccactgtgcgtgtagtgaaccagttgcttactgagatggacgggttggag
acacgccgccaggttttcatcatggctgccaccaaccggccagacatcattgatccagca
gtccttcgacctggccgtttggacaaaacattgtacgttggtttgcctccgccagaagac
agacatgccatattgctcactattactaagggaggaactaagccttgtctggagttagat
gtgaacttagaggaaattgcccatgacaaacggtgtgactgtttcactggggcagacttg
tctgcactagttagagaggcttgcgttaatgctttaagagcccacctctactctcaaaca
gctcttgcccacacagggcacacattctcctccagctctgttaaaggcatacgggtaagc
aggcagaattttgaagaggctttgaagaaggtgcggccgtccgtgtccaaaaaggaccag
ctcatgtatgagaaactgcgagaatctctcaccagatag
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