Ictalurus punctatus (channel catfish): 108260895
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Entry
108260895 CDS
T04658
Symbol
glrba
Name
(RefSeq) glycine receptor, beta a isoform X1
KO
K05196
glycine receptor beta
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04080
Neuroactive ligand-receptor interaction
ipu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
108260895 (glrba)
04082 Neuroactive ligand signaling
108260895 (glrba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108260895 (glrba)
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ipu04040
]
108260895 (glrba)
Membrane trafficking [BR:
ipu04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
108260895 (glrba)
Ion channels [BR:
ipu04040
]
Ligand-gated channels
Glycine
108260895 (glrba)
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Gene cluster
GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
DUF719
PGA2
Motif
Other DBs
NCBI-GeneID:
108260895
NCBI-ProteinID:
XP_017317081
Ensembl:
ENSIPUG00000001898
UniProt:
A0A2D0QH09
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Position
29:2388116..2415850
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AA seq
540 aa
AA seq
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MREEGCEKLSLLLRKKSQKYSALMDIKQLQTNHRCSVMDLRSLFLLLLLVPFFAEGASKD
GGKPKKGKKGKKPVVCPSQLSAEDLDRVPANSTSNILNRLLVTYDSRIRPNFKGIPVEDK
VNIFINSFGSIQETTMDYRLNIFLRQRWNDPRLRLPTDFKSDALTVDPKMFQCLWKPDLF
FANEKNANFHDVTQENILLFIFRNGDVLISMRLSVTLSCPLDLTLFPMDTQLCKMQLESY
GYTTKDLVFMWQSGDPVQMDEIALPQFDVKQEDIAYRNCTKFYSGTGYYTCVEVIFTLRR
QVGFYLMGVYAPTLLIVVLSWLSFWINPDASAARVPLGILSVLSLTNECTSLASELPKVS
YMKAIDIWMIACLLFGFASLVEYAVVQVMLNSPKQIEAEKVRMAQKEKEKEKEEKEKEAK
ATSKANSINGTGGTPIHVNTLQVVETRCKKVCTSKSDLRSNDFSIVGSLPRDFELSNFDC
YGKPIESTNALLKSQNKNAKKPAPPKPVIPSAAKRVDLYARALFPFSFLFFNVIYWSVYL
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgagagaagaaggctgtgaaaaattgtctttattgttgaggaaaaagtcacaaaaatac
tctgctctcatggatatcaaacaattgcaaacaaatcacaggtgttcagtcatggatctg
aggtcgttgttcttgctgctgttgctggttccttttttcgctgagggcgcttcaaaagat
ggaggcaaacccaagaaaggcaagaaaggcaaaaaaccagtcgtctgtccttctcagttg
tcagccgaggacctcgatcgagttcctgccaattcaaccagtaacatcctcaaccgcctg
ctcgtgacttatgactcccgaatccgccccaacttcaaaggcattccagtggaggataag
gtgaacattttcatcaacagctttggctcaattcaagagaccacaatggattaccgcctg
aacattttcctgcggcagcgctggaacgacccgaggttgcgtttgccgacagacttcaag
tcagacgcgctgacggtggaccccaaaatgttccagtgcctgtggaagcctgatctgttc
ttcgccaacgagaagaacgccaacttccacgacgtgacacaggagaacatcctgctgttc
atcttccgcaacggggacgtgctcattagcatgaggttgtcagtgactctatcgtgtccc
ctggatctcacccttttccccatggacacacaactttgcaagatgcagctagagagctac
ggctacaccacgaaggacctggtgttcatgtggcagtctggtgacccagttcagatggac
gagattgctttgccgcagtttgatgtcaaacaagaggacatcgcttacaggaactgcacc
aaattctactctggaacaggttattacacgtgtgtggaggtgatattcactctcaggagg
caggtcggcttctacctgatgggcgtctacgctcccacgctcctcatcgtggtcctgtca
tggctgtctttctggattaaccccgatgccagcgcagcccgcgttcctttaggtattctg
tctgtcctgtcactcaccaacgaatgcacgtctctggcgtctgaactgccgaaagtctcc
tacatgaaggccatcgatatctggatgatcgcctgcctgctcttcggcttcgcctctctg
gtggaatatgctgtggttcaggtgatgctgaacagccccaagcagatagaggcggagaag
gtgaggatggcgcagaaggagaaggagaaagaaaaagaggagaaggagaaggaagcgaag
gcgacgtccaaggccaactccatcaacggcaccggaggaaccccgatccacgttaacacg
ctgcaggtggttgaaacccgctgtaagaaggtgtgcacctccaaatcggacctgcgctcc
aacgacttcagtatcgtcggttctctgccccgcgacttcgagctctccaacttcgactgc
tacgggaagcccatcgagtccacgaacgcgctgctcaaatcacagaacaagaacgctaag
aagccggcgccgccgaaacccgtcattccgtccgccgccaagcgcgtcgacctgtacgcc
cgtgccctcttcccgttctccttcctctttttcaacgtcatctactggtccgtttacctg
tga
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