Ictalurus punctatus (channel catfish): 108260926
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Entry
108260926 CDS
T04658
Symbol
arhgef40
Name
(RefSeq) rho guanine nucleotide exchange factor 40
KO
K24316
Rho guanine nucleotide exchange factor 40
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108260926 (arhgef40)
Membrane trafficking [BR:
ipu04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
108260926 (arhgef40)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KIAA1755_N
SOS1_NGEF_PH
RhoGEF
KIAA1755_C
IQ_SEC7_PH
PH
DHC_N2
Motif
Other DBs
NCBI-GeneID:
108260926
NCBI-ProteinID:
XP_017317144
UniProt:
A0A2D0QFR0
LinkDB
All DBs
Position
29:8596358..8642735
Genome browser
AA seq
1786 aa
AA seq
DB search
MGSEAVEDCVQGALSSLYPPFESTAPPLLSQVFSVLESTYQHDSLRYLLDFFIPAKHLLH
RLQQHACSQYLGCLFLHSGWPLCLGEKVVVQLSTLDWRLLRSNDFYLQVVPFSTRCPRLA
LKCLALGGRNVQEVLVPESQHPLVFTAEWLHCINKERGCKREGGGGLDTCLVSTSDGVVR
IPWDEVVYPKLLHNPTDLELPSTHPPALDYLSPNTGSLGWCSSPGDPDAWSWDEEDDLPP
DGNEADSDSMLRHLRQASDGCGDYVELLEPRGGPDGGTDSKQRYLEMHGICKTKTLPLCR
RSKAFRIRRGKAWGYAKTEISGRTGSLRRRDSNNSGKNIGGARKDLVNSRPPPRVIDLVR
ERQPSHECIQDSDEGGGDAVVMDNQDLYLEGPSKERRPGVGEERKGAGSTLPWEECHRGR
ASSSELSSRSKYINRIDIHTTGTIGADQSDQDQGFHSDCVFEDDKSVAEGETLRNATAGV
NNVSDCSGHLVNGSKAKLNTQPDSSQNRELNSSHNDQNSTKNSGNSKGQKGKCNEHRKPE
KNLSQPGTDNIAGERQVGKLEEHVCPRGKDVKVGGSRAPRRRRKAKGGKRKGKSGGRGNP
KNKEDPESSTKGQKKASQLPETSDSPAKSPLFKDTHSDEGKNTVKKLANGHEVEPKFTDG
TGEKQPDGQQKIFPDAKAQSEAASPDHSPEEIIPSASSDQSKAPSPKAPALLRELNEDLL
QSGKFIVTGTVDRLGRGLVITEAHVPEEGHSLSDIVQLLSCYYTITRPSAREKGLTVLVD
SRQASPSELWFSALSSFKAQTAAGLGCVLILTDEEQESASYTLDGIEVHTVKGTGVLQQY
VDRQQLTKELDGDFEHSHNDWLSFRLSLEHLTERCESVLSLLEDALMSMGTEPLPDCIKS
VPLSVEKHKQLMAGVLSDQRLTELQRRGGAWLAGLANGTSRLAHRSPDCSAALAATSSLY
DSVDDSLHRLVRVSNQRSHDLEALSRLATLVDKLDKCETEIDRVQEQLEEYKDPPQSLSR
LSLKQQKFKSFRESAMELHSETLVVLGEVESWSELEWGGLTAVLERLPSIREKVRGMSHC
LSDCWTQLDNTQRLLSTLTEASQWCDVVSSSSPHSTPSSPLSSLPPIPPSRFQDARALAL
ELGGGALLDLWAQTLERYQRTLAQFKTRMLQAERGMPTNHGQDPSVGMAQVPKTPISSTS
SLWEIEGEGDGGWCGGGGEAGLQSWGSLASLFRPQNCSTLKIGEEKKKEGTAGAAGGGKF
LQNLLNPSKKSPTEAPLPPKPPRRRHPSFDLQALLAPRRSTTASPKPAEAPLAMSSRSSP
LSWLGKKAIAEPILTAGIATAVPGWRDEKVGGGVGGGGVLIRGVEVSSKEVADHTGLTRQ
HVLLGRTDRETGVERPGTTAQSKLYLQWCRLVNSERQYVALLKAVEETYLPLLDSTDTPL
CLRGKADSIFSNWSSLATFHSQLLLPAIEGALSQTLQQTDCFSKYRDQLLQYSHYIRMKP
ELDSLLVNQAADFFKVKLSSSPVLPTISFPQCLAVPTQRLQHYCEILEELGGVNPGPDSA
LSIIRHAQRHGEDLRISDLITGCPVPVAERGDLVRQGELYVCPGGRRKKTGIRTVFLYQH
YVILTKHKTPSQGCSAYTFKNSIKTGEMGLTQSVGEEGLRFEVWVRQTSRTKYCLTLQAS
SSEDREAWTHDIAQLLWTHAIHNTELCLKESLCMGVSSKLLLDVTGTQTSELDSGFSLND
RVQSSCSDSSSVGSQKEGGSPSIARDAKKDSAQTVHTQSSSPSTAV
NT seq
5361 nt
NT seq
+upstream
nt +downstream
nt
atgggttcggaggcggtggaggactgtgtgcaaggggcgctctcctccctctatcctcca
tttgagagcactgcacccccccttctatcccaggtcttttctgtcttggagtccacctat
caacatgacagtttaaggtatctgctggatttcttcatcccagccaaacatcttctgcac
agactccagcagcatgcttgttctcagtatttgggctgtttgttcctgcactcgggttgg
cccctttgtttgggtgagaaggtggtggtccagctttctactcttgactggaggctcttg
cgaagcaacgacttctacctgcaggtggtgccattctccacgcgctgtccccgcctggcc
ctcaagtgtctagctctgggtggccgtaatgtccaggaggtcttagttcctgaatctcag
caccctctggtgtttacagcagagtggctgcactgcatcaacaaggaacgtggttgcaag
agagaaggtggaggtggtttagatacttgtctggttagtacttctgatggagtggtacgt
attccatgggacgaggttgtttacccaaaactactacacaaccccaccgacctggagctt
ccttccacacacccccctgcccttgattacctttctccaaacacagggagtctgggatgg
tgttcttcccctggagatcctgacgcctggtcctgggatgaagaggacgatcttcctcca
gatggcaatgaggctgatagtgactctatgctgcggcacctcagacaagccagtgatgga
tgtggggattatgtggagctcctggaacctcgaggaggtccagatggtggcactgattcc
aagcagcgctatttggagatgcatgggatctgcaaaaccaaaactttgccgttatgtagg
cgaagcaaggcctttcgaattcggcggggtaaggcctgggggtacgcgaagactgagatc
agtggaaggacggggagcttacgtaggagggacagcaacaacagcgggaagaatattgga
ggtgctcgcaaggatttggtcaactctcgacccccacctcgagtcattgatctggtgcga
gagagacagccatcccatgagtgcattcaggactcagatgagggtggtggagatgcagta
gtcatggataaccaggacctttatttagagggtccatccaaggagagaaggcctggtgtg
ggtgaggagaggaaaggagctggaagcacactaccctgggaagagtgccatagaggaagg
gccagcagcagtgagctgagctctagaagtaaatatatcaacagaatagacattcatact
acaggaactataggggcggaccaatcagatcaggatcaaggattccactcagactgtgtt
tttgaggatgataagtcagtggctgaaggtgaaacattgcgtaatgcgacagcaggtgtg
aataatgtgtctgattgcagcggacatttggttaatggatcgaaagcaaagctaaacaca
caaccagattcatctcaaaacagggagttaaactcttcccacaatgatcaaaactcaacc
aaaaactcaggaaactccaaaggacaaaaaggaaaatgtaatgaacataggaaaccagaa
aaaaatctttctcaaccaggtactgacaacattgctggtgaaaggcaagttgggaaattg
gaggaacatgtgtgccccaggggaaaggacgtcaaagtgggaggatctcgtgcacccagg
agaaggaggaaagctaagggtggaaaaaggaagggtaaatctggtggccgtggcaaccct
aaaaacaaagaagaccctgaaagttccacaaagggtcagaagaaagcaagccaactaccc
gaaacatctgattcaccggctaaatcacctctcttcaaagatacccattcagatgagggt
aaaaatacagtaaagaagctagcgaatggtcatgaagtagagccaaaatttactgatggg
actggagaaaaacaaccagatggccaacaaaaaatcttcccagatgctaaggctcaatca
gaagcagcttcacctgatcattcaccagaagagattataccatcagcatcttctgaccag
tcaaaggcaccatctccgaaagcccctgctctgcttagagagttaaacgaagatctgctc
cagtcaggaaagttcatagtcacaggtactgtggatagactgggacgtgggttggttatt
acagaagcacacgtacctgaggagggtcatagtctcagtgacattgtgcagctgttatcc
tgttattacaccattaccagaccttcagccagagaaaagggcttgacagtgctggtggac
agtaggcaggcttctccttctgagctttggttttctgccttgagttcattcaaggctcag
acagctgcaggccttggctgtgttctcattcttacagacgaagagcaagaatcagcctca
tatacgctggatgggatagaggtacacacagtaaaaggaactggagtccttcagcagtat
gtggatagacagcagctaactaaagaattggatggagactttgagcactcacataatgac
tggttatccttcagactgagcctggaacatttgactgaacgctgtgagagtgtcctctct
ctgttggaagatgcactaatgtctatgggcacagaaccactgcctgactgtattaagtct
gtaccactaagtgttgaaaagcacaagcagctgatggctggtgttctgtctgaccaacgg
ttgacagagttacaaagacggggtggggcttggctggctggactggctaacggaacatcc
agattggctcacaggtcaccagactgcagtgctgctttggccgcaacctccagtctctat
gacagtgtcgatgattcactccatcgactggtgcgtgtttctaatcagagaagtcatgac
ctggaagcactcagtagactggcaactctagtggacaaactggataagtgcgagactgaa
atagaccgtgtgcaggagcaactggaggaatataaggatcctcctcaatcactaagccgc
ctctcactcaaacagcagaagttcaaaagcttcagggaatctgccatggaacttcacagt
gagacactagtagtgctgggtgaggtcgagagctggtctgagctggagtggggaggcctg
acggcagtccttgagcgactcccatcgataagagagaaagtgagaggaatgtctcactgc
ctgtctgactgctggacccaactggacaacacccagagactactgtccactcttactgag
gcctcccagtggtgcgatgtggtctcttcctcctctccacattccacgccttcctctcct
ctgtcctctctccctcccatccctccatcccgtttccaagatgcacgagctttggccctt
gagcttggtggtggtgctctgttggacctgtgggcccagactctggagcgttaccagcgc
acattagcacaattcaagactcgcatgcttcaggctgagcgtggcatgcccaccaaccat
ggtcaggatcccagtgtgggcatggcacaggtgccaaaaacacccatctccagtacctct
agtttgtgggagatagagggagagggagatggagggtggtgtggaggaggaggtgaagca
gggctgcagtcctggggctcactggcctcactgttccgtccacagaattgctctacgctg
aagataggagaagagaagaagaaagagggaactgcaggagctgcggggggagggaagttc
ctgcagaacttgctaaacccaagcaagaaaagtcccactgaagctcccctccctccgaaa
ccacctcgcagacgtcacccaagctttgacctccaggccttgctggcgccccgtcgttca
actacagcatcaccaaagccagcagaggctccacttgccatgagcagccgctcatctccg
ctgtcctggctggggaagaaagccatagctgagcctatcctaacggcagggattgcgaca
gctgtaccaggatggagggatgagaaagttggaggaggggtaggaggagggggtgtgttg
atccggggcgtggaggtcagcagtaaggaggtggcagatcatacggggctcaccagacag
cacgtactgcttggccggactgatagagagacaggagtggagaggcctggcactactgca
cagagtaagttgtatctgcagtggtgtaggctggtcaattcagaaagacagtacgtagct
ctattgaaggctgtggaggagacttacctccctctgctggatagtactgatacaccactc
tgtctgagaggaaaggctgactcaatcttctccaactggagcagccttgccacttttcat
tcacagctactcctccccgccattgagggtgccctctctcaaacgctacagcaaactgac
tgcttcagcaaatatagggatcaattactgcaatactcccactacatccgtatgaagcca
gagctggactccctgctggtcaaccaagctgccgatttcttcaaggtaaagctgtccagc
tctcctgtgctccccaccatctcctttcctcagtgccttgctgttccaactcaaagacta
cagcactactgcgagatccttgaggaactgggaggtgtaaaccctggacccgactctgcc
ctctccattatcagacatgcacagcgccatggagaggacctgaggataagcgacctcatc
actggctgtccggtacctgtggcagaacgtggggatttggtacgtcagggcgagctatac
gtctgtccaggcggacggagaaagaagacaggcatcaggactgtgtttctctaccagcat
tacgttattctcaccaaacacaaaactcctagccaaggctgcagtgcatacacctttaaa
aacagcataaagacaggagagatgggtttgacccaaagcgttggagaggagggtctgagg
tttgaggtttgggtgagacagacatctcgcaccaaatactgtctcactctccaggcatca
tcttcagaggacagagaagcctggacgcatgacattgcccagctcctgtggactcatgcc
atccataacacagaattgtgtctaaaggaatctctgtgcatgggagtgtccagcaagttg
ctgctggatgtgacgggaactcagacatctgagctagactcaggcttcagccttaatgac
agggtccagagtagctgttcagactcttcctcagttggaagtcagaaagaaggaggttct
ccctccatcgcaagagacgcaaagaaagattcagcacaaactgtccatacacaaagctca
tcaccatcgaccgccgtttga
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integrated database retrieval system
