Ictalurus punctatus (channel catfish): 108260955
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Entry
108260955 CDS
T04658
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, mitochondrial
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108260955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108260955
03016 Transfer RNA biogenesis [BR:
ipu03016
]
108260955
Enzymes [BR:
ipu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
108260955
Messenger RNA biogenesis [BR:
ipu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
108260955
Transfer RNA biogenesis [BR:
ipu03016
]
Prokaryotic type
tRNA degradation factors
108260955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
OAF_N
KH_KRR1_2nd
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
108260955
NCBI-ProteinID:
XP_053533635
Ensembl:
ENSIPUG00000014624
UniProt:
A0A9F7R0D2
LinkDB
All DBs
Position
29:13828143..13842932
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AA seq
765 aa
AA seq
DB search
MSRFLRLSCSLSRAARRSVWSSHSTERRVGVDLEGRKLEISTGKLARFADGCSVVQLGDT
SVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNYLRREISSSDVEILTSRLIDRSI
RPLFPAGYFYDTQVLCNILAVDGVNDPDVLAINGASAALAISDIPWNGPVGAVRVGLIDG
EFVVNPTRKEMSSSSLNLVIVGAPSSQVVMMEAAAENVLQQDFCHAIKLGVKHTQQIIHA
IQQLVREHKVVKRTPQKLFSAPPEVVEYTRQLAGEKIYAVFTDFSHDKISRDEAVNKIRL
DTEEPVKERFPQAEPFEVIEAFNVVSKDVFRNLVLTEYRRCDGRDLTSLRDISCEVDVFK
PLHGSALFQRGQTQVLCTVTFDSIESSVKADIITTALSGIKDKNFMLHYEFPPYATNEIG
KMGGLNRRELGHGALAEKALRPVIPKDFPFTIRVTSEVLESNGSSSMASACGGSLALMDA
GVPISSAVAGVAVGLISKPNPEKVSEIHDYRLLTDILGIEDYNGDMDFKMAGTNKGITAL
QADVKIPGLPLKIVMEAIQQATVAKREILGIMNKTLSKPRGSRKENGPVVENVRVPISRR
ARFVGPGGYNLRRLQAQTGVTISQVDEETFSVFAPTPNAMHEAQEFITDICKDDQEQQLE
FGAVYTATITEIRDSGVMVKLYPNMSAVLLHNSQLDHKRIKHPSALGLEVGQQIQVKYFG
RDPTDGRMRLSRKVLQSPAATVVKTLSERQSITMGTADGQTSASS
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgagtcggttcctgagactcagctgttcgctgtctcgcgctgctcggcggagtgtgtgg
tccagtcacagcacagagaggagagtcggagtggacttagagggaagaaaactggagatc
tcgacggggaagctcgcgaggtttgcggatggatgttctgttgtgcagctgggagacacg
tcagtgatggtcaccgccgtcagcaagaccaaaccttcaccctcacagttcatgcccctg
gtggtggattacagacagaaagcggcggccgctggacgaatccccaccaactacctgcgg
agagaaatcagcagcagcgatgtggagattctcaccagcagactgatcgaccgctccatc
aggccgctgtttcccgccggatatttctacgacacgcaggtcctgtgcaacattttagcc
gtcgacggcgtaaacgatcccgatgtcctcgccatcaacggagcgtctgccgctctcgcc
atctccgatatcccctggaacggaccggtcggtgctgtgcgcgtgggcctgatcgacggg
gagttcgtcgtgaacccgacgcggaaggagatgagctccagctcgctgaacctggtgata
gtaggagctccttccagccaagtggtgatgatggaagccgctgccgagaacgtcctccag
caggacttctgtcacgccatcaaactgggagtgaaacacacgcagcagatcatccacgcc
atccagcagctggtccgagagcacaaggtggtgaagcgcacgccgcagaaactcttcagc
gccccgcccgaggtggtggagtacacgcgccagctggctggtgagaagatctacgctgtg
tttacagacttttcacacgataagatctcaagagatgaagctgtgaacaaaatccgactc
gacacagaggagccagttaaagagagatttcctcaagccgaaccgtttgaagtcatcgag
gccttcaacgtggtttccaaagacgttttccgtaacctggtgctgaccgagtacagaagg
tgtgacggacgagacttgacgtcattaagagacatttcgtgtgaagtggacgtctttaaa
cctctacacggctccgcgctgttccagagaggacaaacacaggtgctctgcactgtaact
ttcgactctatagagtccagcgtgaaagcggacatcataaccacggctctgagtgggatc
aaagacaagaatttcatgctccactatgagtttcctccctacgcgacgaatgaaatcggg
aaaatgggcggactgaacagacgagagctcggtcatggcgctctggctgaaaaagccctg
agaccggtcattcctaaagacttcccctttacaatccgagtgacctccgaggtgctggag
tccaacggctcgtcgtccatggcgtcagcgtgtggaggaagtctggctttaatggacgcg
ggtgtgccgatctcctctgcggtggccggagtggctgtgggtctcatttccaaacccaac
cctgagaaagtctccgaaatccacgactacagattactaaccgacattttagggatcgag
gactataatggagacatggactttaaaatggccggaacaaacaaaggcatcactgcgtta
caggctgatgttaagatcccaggacttcctctgaaaatcgtaatggaggccatccagcag
gcgacagtggccaagagagagattttagggatcatgaataaaaccctttccaagcccaga
ggttcgaggaaggagaacggccctgtagtggaaaacgtccgcgtgccgatttccagaaga
gctcgatttgttggtcctggaggatacaacctccgccgactgcaggcccaaacaggcgtg
actataagccaggtggacgaggagacgttctcggtgttcgctccgactccaaacgccatg
cacgaggctcaggagttcatcaccgacatctgcaaagacgaccaagaacagcagctcgaa
ttcggggccgtgtacacggcaaccatcacagaaatcagagacagtggtgttatggtgaag
ctttatcccaacatgagcgctgtgctcctacacaactcgcagctcgatcataaacggatc
aaacatccctctgctctcggactggaggtcggacagcagatccaggtgaaatatttcgga
cgcgaccccacggacggcaggatgaggctgtcgcgtaaagtgctccagtctcccgcagcc
accgtggtgaagacgctgagcgagaggcagagcatcaccatgggaacggcagacggacag
acgtcagcttcctcctga
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