Ictalurus punctatus (channel catfish): 108260965
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Entry
108260965 CDS
T04658
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03030
DNA replication
ipu03410
Base excision repair
ipu03420
Nucleotide excision repair
ipu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108260965
03410 Base excision repair
108260965
03420 Nucleotide excision repair
108260965
03430 Mismatch repair
108260965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ipu03032
]
108260965
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108260965
DNA replication proteins [BR:
ipu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
108260965
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
108260965
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_33
AAA_5
AAA_7
AAA_30
AAA_17
AAA_16
Rad17
RuvB_N
AAA_14
RNA_helicase
BRCT_2
nSTAND3
AAA_18
SKI
AAA_19
NTPase_1
AAA_28
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
108260965
NCBI-ProteinID:
XP_053533693
Ensembl:
ENSIPUG00000003606
UniProt:
A0A9F7REC7
LinkDB
All DBs
Position
29:3557575..3583411
Genome browser
AA seq
1129 aa
AA seq
DB search
MDIRRFFAPKPGHGGSSSTDDEPKNKKKPASKVQNTSSKLEEKRAAKRKKRVIADSDEEV
EEKKGKKSSKEKPAASGKKDPVTYVSDSDSDGAFSSLKKSSKLKENGCSHEKKASDSKET
KAKQVKTPPVKSPSPKGEAKKNVLGPTAPKHTPTSVFDYFGTATAKRSEKKLVASTSTKR
KAPTRDTDGALDDDEAVAKRLQMDEDMELEKQIHEDEEFARTLAMCDEAPMSKKARVNSR
SPSKTGSQANGAGAKRAPKEPSPKKSPVKASSKLALMKKRADEEEEEERRNSEKEEKKSK
LVISPKKEPIARVSSEAAATPKTGVSAGSAKRVSTPKSGGGSNKTSPTKPETSPEDAERK
RVNSTAYRNFLNREGPRALGSKVIPQGEENCLEGCVFVLTGVLESLERDDAKSLIERYGG
KVTGNVSRKTTYLVLGRDSGASKTEKAQSFGTKIINEDELLELIRTKPGKKSKYEIAAEA
ESKATKSRSPDSKGKRTPSGRKVSPGKPSASKSSPSPRKSKPSSSSTPGTSRASRQGSSS
EVRKTLEFGTGKSTPSVAGDDGSSLLWVDKYRPRNLKNLIGQQGEQSCAHKLLRWLKNWH
KTHSGNAKPTAARFGRFGGKDDGSGFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNAS
CTRSKNSLKEVIAESLNNTSIKNFYTGASQTVSDKHVLIMDEVDGMAGNEDRGGIQELIG
LIKNSKIPIICMCNDRNHMKIRSLANYCFDLRFHRPRVEQIKGAMMSIAFKEGLKIPPPA
LNEVILASNQDIRQVLHNLSMWSATDKVMTYDQAKADANRAKKDMKMGPFDVCRKVFVSG
EETAHMTLIDKSDLFFHDYSLAPLFVQENYIHVRPAAAGGNLKNHLVLLSKTADSICDGD
LVDRQIRSRQTWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFSSTGKHSRIVQEL
SSHMSLKTLSSKEAINLDYLPYLRSALLEPLRCRGADGASQSVTLMDDYDIVKEDFDSIM
EISTWGGQADPYSKLDSKVKAAFTRAYNKESHLTPYSLQVVKKGRRGAVEPDLSLDSDLQ
GQEEDEEEEEETLNTDAMIKQKKAKPTKEVKQESARDSGKGKGKGKGRK
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atggatatacgcaggttctttgcgccaaagcccggccacggcggcagcagcagcaccgac
gacgagccgaagaataaaaagaaacccgcgtccaaggttcagaatacaagctccaaattg
gaggaaaaacgagcagccaaaaggaagaagagggtcatcgctgattcagatgaggaggta
gaggagaagaaaggaaagaaaagctctaaagagaagcctgctgcatccgggaagaaagat
cccgtgacttatgtttctgattcagactccgatggagccttttcgtctctgaaaaagtcc
tcgaaactcaaagagaacggctgtagccacgagaaaaaggcctcggactcgaaggagacc
aaagcgaagcaggtaaaaacgcctcctgttaaatctccaagcccaaagggagaagcgaag
aagaacgtactcggtccgaccgcacccaaacacacccccacctctgtgttcgattacttc
gggaccgccacggccaagagatcagagaagaagctggtggctagtacgagcaccaagagg
aaagcgcctacacgagataccgatggagcactcgatgacgacgaggccgtcgctaaacga
ttacagatggacgaggacatggagttggagaagcagatccacgaagacgaggagtttgct
cgaaccctggccatgtgtgacgaggccccgatgtctaaaaaggctcgcgtgaactcgcgt
tcgccctcgaagaccggctctcaagcgaacggtgcaggagccaagcgtgcgccgaaggag
ccttcaccgaagaagagtcctgtaaaagccagttccaaactggctctgatgaagaagcga
gccgacgaggaggaggaggaggagcggcggaacagcgagaaggaggagaagaaaagcaaa
ctcgtcatctccccgaagaaagagccaatcgcacgggtttcatcagaggcggcggccaca
cccaaaacgggcgtttcggcgggaagcgcgaaacgcgtttccacacccaagagtggagga
ggaagtaacaaaacctctcctacgaaaccagagaccagtccagaggacgcggagaggaag
cgcgtgaattccacggcgtatcgaaacttcctgaaccgagaaggacctcgcgccctgggc
tctaaagtgatcccgcagggagaggagaactgcctcgagggctgtgtgtttgtgttaacg
ggtgttttggagtctctggaacgggacgacgcaaagtcactaatcgagcgctacggtggg
aaagtcacaggaaacgtcagccggaaaaccacgtacctggtgctgggccgggacagcgga
gcctccaagacggagaaggcacagagttttggcaccaagatcataaacgaggacgagtta
ctggaactgatccgaaccaaaccgggcaaaaagtccaaatacgagatcgctgcagaagct
gagagtaaagccactaaatcaaggagcccggactctaaaggcaaacgcaccccttcaggg
cgcaaagtctcacccggaaaaccctccgcaagcaagagcagtccctcaccgaggaagtct
aagccatcttcctcttctacccctggaacttctagagcttcccgccaaggctcttcatcc
gaggtcagaaagactttggagtttggtacaggaaaaagcacgccctctgtggcgggggat
gacggcagcagcttgttgtgggtggataagtaccgcccccgcaatctgaagaaccttatc
gggcagcagggagagcagagctgtgcccataagctactgaggtggctgaaaaactggcat
aaaactcacagtggcaatgcaaagccaacagctgctaggtttgggaggttcggcggtaag
gatgatggttctgggtttaaagctgctttgctgtctggacctcctggtgtagggaaaacc
accactgctgctcttgtgtgcgaggagttgggttacagttacgtggagatgaacgccagc
tgcacccgcagcaagaacagtctgaaagaagtaatcgccgagtctctcaataacacgagc
atcaagaacttctacacaggtgcatctcagacggtcagcgataaacacgttctgataatg
gacgaggtggatggcatggcaggaaatgaggacagaggaggaatacaggagctgattggt
ctgatcaaaaattcaaagatccccattatttgcatgtgtaacgaccgcaaccatatgaag
atccgctccctcgctaactactgcttcgacctgcgtttccaccggcctcgcgtggaacag
ataaagggtgccatgatgtccattgcttttaaagaaggtttaaagatcccgcccccggcg
ctcaacgaagtcatcctggcgtcaaatcaggacattcgacaggtgctgcataatttgagc
atgtggtcagccacggacaaggtcatgacctacgaccaggcaaaagcagacgctaacagg
gccaagaaggacatgaaaatgggaccatttgacgtgtgcaggaaagtgtttgtttcaggt
gaagagaccgcccacatgaccctgattgacaagtcggaccttttctttcacgattactcg
ctggcaccgctgttcgtccaagagaactacatacacgtccggccagctgccgcaggggga
aatctgaagaatcatttagtgttgctgagtaaaacggccgacagcatctgcgatggagat
ttagtggacaggcagatccgttctcgccagacctggtctctgctacccacacaggcaatc
tacgccagtgtgctgcctggggaattgatgcgcggttatatgagtcagtttcccacgttt
cccagctggctggggaagttctcatccacgggcaaacacagtcgtattgtacaggagctg
tcctcacacatgagtctgaagacactgagcagtaaggaggcgataaatctagactacctg
ccctacctgcgttccgccctgctggagcccctgcggtgtcgtggggcagacggagccagt
cagagcgtgacgctgatggacgactacgacatcgtcaaagaggatttcgacagcatcatg
gagatcagtacatggggcggacaggccgatccgtactccaagctcgactccaaggtgaaa
gctgcattcacgcgagcttataacaaggagtcccacttgacaccgtactcactgcaggta
gtaaagaaaggtcgcagaggagcggtcgaacctgatctgagtttagacagtgacctccag
ggacaggaagaagacgaggaggaggaggaggaaactcttaatacggacgccatgatcaag
caaaagaaggccaaacccacaaaagaggtcaagcaagagagcgcaagggattccggaaag
ggcaaaggcaaaggaaaaggcagaaagtga
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