Ictalurus punctatus (channel catfish): 108260989
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Entry
108260989 CDS
T04658
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04517
IgSF CAM signaling
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
108260989
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108260989
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ipu04812
]
108260989
Cytoskeleton proteins [BR:
ipu04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
108260989
Intermediate filaments
Intermediate filament-binding proteins
108260989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
PH_11
CAMSAP_CH
SOS1_NGEF_PH
Motif
Other DBs
NCBI-GeneID:
108260989
NCBI-ProteinID:
XP_017317266
Ensembl:
ENSIPUG00000006543
UniProt:
A0A2D0QHG8
LinkDB
All DBs
Position
29:complement(6712341..6820826)
Genome browser
AA seq
2361 aa
AA seq
DB search
MELQRATSMPGPLSPGHISPGHLSPEHLSPGPGPSYQDSSPAISYGAAAFNYNQLEGRFK
QLQDEREAVQKKTFTKWVNSHLARVSCRITDLYMDLRDGRMLIKLLEVLSGERLPKPTKG
RMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVET
EDSKEKKSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLK
KSNAHYNLQNAFNLAEQHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYFSKMKALKVE
GKRIGKVLDNAIETEKMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNT
YRTVEKPPKFTEKGNLEVLLFTIQSKMRANNQKVYIPREGKLISDINKGWERLEKAEHER
ELALRTELIRQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEA
IETDIAAYEERVQVVVAVASELEAENYHDIKRITVRKDNVLRLWEYLLELLKARRQRLEL
NLGLQRVFQEMLYIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHTLVEADIAIQADRVKS
VNTNAQKFADDSEGYKPCDPQVIRDRVAHMEFCYQELTQLAAERHARLEESRRLWKFFWE
MAEEEGWIREKEQILSSDDYGKDLTGALRLVSKHKAFEDEKSGRAGHLQQTVHQGEELVA
AGHFGADKISQRISDVQEQWVALEQLSAARKVRLQQACAVHQFQADADDMDAWMLDALRI
VSSTDVGHDEFSAQALVKKHKDVAEEISSYRPVLDALHEQAKTLPEEQAHSADACGRLTG
IEERYKEVVELTRLRKQALQDALALYKMLSEADACELWIDEKEQWLNGMEIPEKLEDLEV
IQHRFESLEPEINSQASRVAVVNQIARQLIHSGHPSEKEIKTQQDKLNTRWSQYRDLVDR
KKDALNSTLGVQNYYLECNETKSWIREKTKVIESTQDLGNDLAGVMALQRKLTGMERDLV
AIEDKLGDLGKEADRLAEEHPDQAPGIKGHLGEIKDVWEEMKGTMCAREESLGEASKLQQ
FLRELDDFQVWLSRTQTAVASEDMPNTLAEAEKLLAQHEGIKNEIRNYKEDYQKMRDMGK
TVTQGQTDAQYMFLSQRLQALDTGWNELQKMWENRKKLLSQSHAYQLFLRDTKQAEAFLN
NQEYVLAHTEMPATLEGAEGAIKKQEDFMTTMDANEEKINGVVETGRRLVSDGNINAERI
QEKVVSIEERHKKNREAARELLTKLKDNQDLQRFLQDCQELSLWISEKMLTAQDMSYDEA
RNLHSKWLKHQAFMAELQSNKEWLEKIQKDGTALVAEKPETEAVVKEKLEFLKKMWDELE
STTQTKAQCLFDANRAELFTQSCADLDKWLSGLQGQIQSDDFGKDLTSVNILLKKQQMLE
SQVEVRQKEVEELRTQAQALSQEGKGSDEVDGLRCGVEKKFHELQEPLKKRRSNLMASRE
IHQFNRDVEDEILWVEERMPMATSTEHGNNLQTVQLLIKKNQTLQKEIQGHQPRYDDIFE
RSTHILKDNSPVSATIRQRLDELKRLWHLIQEEVEKRHRRLEEAHKAQQYYFDAAEAEAW
MSEQELYMMSEEKAKDEQSSVAMLKKHQILEQAVEDYAETVHQLSKTSRALVAAGHPESE
RISMRQSQVDKLYAGLKDLSEERRGKLDERSCLFQLNREVDDLEQWIAEREVVAGSHELG
QDYEHVTMLQERFREFARDTGNIGQERADTVNKMADELINSGHADAATIAEWKDGLNEAW
ADLLELIDTRTQILAASYELHKFYHDAKEVLGRILDKHKKLPEELGRDQNTVEALQRMHT
TFEHDIQALGTQVKQLQEDAARLQSAYAGDKAEDIQRREAEVLEAWRSLLEACDGRRVRL
IDTNDKFRFFSMVRDLMLWMEDVIRLIDAQEKPRDVSSVELLMNNHQGIKAEIDARNDSF
TTCVELGKTLLSRKHYASEEIKEKLLQLTDKRKEMIDKWEDRWEWLRLVLEVHQFSRDAG
VAEAWLLGQEPYLSSREMGQSVDEVEKLIKRHEAFEKSAATWEERFAALERLTTMELLEV
RRQQEEEERKRQAQPVEAPPGDTASPQQRECEQVSQNGPPPEQDSPRDIPVLTSLLSTNS
KEDTGGGDVVNGVAEPSPSSSPTGSRKGKAGQAATLPTKSQDTASAQIEGFLNRKHEWEG
HNKKASNRSWHNVYCVINNQELGFYKDSKSASQGIPYHGEVPISLKESTCEVALDYKKKK
HVFKLKISNGNEYLFQAKDDEEMNSWIQAISCKTPSEISSHSTPASGRTQTLPTSVSMGA
ESSPGKREKDKEKRFSLFKKK
NT seq
7086 nt
NT seq
+upstream
nt +downstream
nt
atggagcttcagagggctaccagtatgcctggacccctgtctcctggacacatttctcct
gggcatctctcccctgagcacctgtctccagggccaggaccatcgtaccaggactccagt
cctgccatcagttacggtgcagccgcttttaactataaccagctggagggacgatttaag
cagctgcaagatgagcgagaagcagtgcagaagaagacctttaccaaatgggtgaactcc
cacctggcccgtgtctcctgccgcatcacagacctctacatggatctgagggatggccgc
atgctcattaagctcctggaggtgctgtctggagagagactgccgaagcccacaaaaggt
cgtatgcgaattcactgtctggagaacgtggacaaagctctgcagttcctcaaagaacag
cgcgttcatctcgagaacatgggctcgcatgacattgttgatggcaaccaccgcctcacc
ctgggcctcatctggaccatcattctgcgcttccagattcaggacattagcgttgagacg
gaagacagcaaagaaaagaagtctgccaaggacgctctgcttctctggtgtcagatgaag
accgcaggttatccaaatgtcaacattcacaatttcaccacgagctggagagacggcatg
gctttcaatgcactcattcacaaacacaggcctgacttgatagactttgacaagctgaag
aaatccaatgcccactataatttgcagaatgcctttaacctggctgaacagcacttgggc
ctcacaaagctactggaccctgaagatatcagcgttgaccatcctgatgaaaaatcaatc
atcacctatgttgtcacttactatcattacttctccaagatgaaggcactgaaagtggaa
ggcaaacgtattggaaaggtgctagacaatgctattgaaactgagaagatgattgagaag
tacgaatctctggcctctgacctgctggagtggattgaacagaccatcattatcctcaat
aatcgcaagtttgccaactctctggttggagtgcagcagcagcttcaggcctttaacacc
taccgaacagtggagaaacctcctaagtttacagaaaaaggcaacctggaggtcctgctg
ttcaccattcagagcaaaatgcgagccaacaatcagaaagtctacatacctcgagaggga
aaactcatatcagacatcaacaagggatgggagaggctggagaaggcagagcatgagagg
gaactggctctgaggacggagctgattcgtcaggagaagttggagcagctagcccgccga
ttcgaccgcaaggcagctatgagggagacctggctaagtgagaaccagagactcgtctca
caggacaactttggttttgatctgcaagccgtggaggcggccactaagaagcacgaagcc
atcgagacggacattgctgcatacgaggagcgtgtgcaggtggttgtggctgtagcctca
gagctggaggcggagaactaccatgacatcaagcgcatcacagtccgcaaagacaacgtt
ctgcggctgtgggagtacctcctggagctcctgaaagctcgacgccaaagactggaactc
aacctgggcctgcagagagtcttccaggagatgctctacatcatggactggatggatgag
atgaagatgttgctgttgtctcaggactatggaaaacatctgcttggtgtagaggacctg
ctgcaaaaacacactctagtggaggcagacattgccatacaggctgaccgtgtcaaatca
gtcaataccaacgcgcagaagtttgctgatgactctgaaggctataagccctgtgaccca
caagtgatccgtgaccgcgtggcccacatggagttctgctaccaggagctgacacagcta
gcagcagagcggcatgcacgtctggaagagtcacgtcgcctctggaaattcttctgggag
atggctgaggaggaaggctggattcgtgagaaggaacagattctgtcatcagatgactat
ggcaaggacctgacaggggcactgcgccttgtcagcaagcacaaggcctttgaagatgag
aagagtgggcgtgccggacacctccagcagactgtgcaccagggtgaggagctggtagcc
gctggccactttggtgccgacaagatcagtcagcgtatttcagatgtacaagagcagtgg
gtagcactggagcagctgtcagcagcccgcaaggtccgtctgcagcaggcctgcgctgta
caccagttccaggctgacgctgatgacatggatgcctggatgttggatgcattgcgcatc
gtgtccagcactgatgtgggtcatgacgagttctcagcgcaggcattggttaagaagcac
aaagatgtggctgaagagatttccagctacagaccagtgctggatgcccttcatgagcag
gccaaaacgttacctgaagaacaggcacactccgcagatgcatgtggccgtctaacgggt
atcgaggaacgatataaggaggtggttgaactgaccaggctgagaaagcaggcactgcag
gacgcactggcattgtacaagatgctgagtgaggctgatgcctgtgagctgtggatcgat
gaaaaggagcagtggcttaacggaatggagatcccagagaaactggaggatttggaggtg
attcaacacagatttgagagtctggagccagagattaacagccaggcttctcgggtggcc
gtggtgaaccagatcgcccgccagcttattcacagtgggcacccaagtgagaaagagatc
aaaacccagcaggacaagctcaataccaggtggagccagtatcgtgacctcgtagaccgg
aagaaggacgctctcaactcgactctgggagtacagaattactatcttgaatgcaatgag
accaaatcctggattcgcgaaaagaccaaggtgatcgagtccacccaggatctgggcaac
gatctggctggtgtcatggcacttcagcgcaagctgactggcatggaacgagatctagtt
gctatagaagacaaactgggtgacctggggaaggaggctgaccgattggccgaagagcat
ccagaccaggctcctggcatcaagggtcatttgggtgagatcaaagatgtgtgggaggag
atgaagggaaccatgtgcgctcgtgaagagtccctgggtgaggccagcaagctccagcag
ttcctcagggagctggatgacttccaggtgtggctgtcacgcacacagaccgctgtggct
tctgaggacatgcccaacactctggctgaggccgaaaagcttttggcacagcatgaggga
atcaagaatgagatccgtaactacaaggaggactaccagaaaatgcgtgacatgggcaag
acagtgacccagggccagacagatgcccagtacatgttcctgagtcagaggctgcaagcg
ctggacactggctggaacgagctccagaagatgtgggagaacaggaagaaactcctgtca
cagtctcatgcctaccagctcttcctccgggatactaagcaggctgaggctttcttgaac
aatcaggaatatgtattggcccacacagagatgccagctacccttgaaggagcagaaggg
gctatcaagaagcaggaagacttcatgacaaccatggatgccaacgaggaaaagattaat
ggcgtggtggagacgggccgcaggttggtcagtgatgggaacattaacgctgaacgcatc
caagagaaagtggtctctattgaggaaaggcataagaagaatcgtgaggcagcccgtgag
cttctcacaaagctgaaagataaccaagatcttcagaggttcctccaggactgccaggag
ttgtccttgtggatcagcgagaagatgttaacagcacaggacatgtcctacgatgaagca
cgcaacctgcacagcaagtggctgaagcaccaggctttcatggcagaactgcagtccaac
aaagaatggctggagaaaattcagaaggatggcactgcactggtggctgagaagccagag
actgaggcggtggtaaaggagaaactggagtttctgaagaagatgtgggatgagctggag
tcaacaacccagaccaaggcccagtgcctgtttgatgccaacagggccgagctgttcacg
cagagctgcgctgacctagacaagtggctctctggtctgcagggccagatacagtcagat
gacttcggtaaagacctgactagtgtcaacatcttgttgaagaaacagcagatgcttgaa
agccaggtggaagtgaggcagaaggaggtggaggagctgcgcacacaggcccaagcactc
agccaggagggtaagggatcagatgaagtggacggtctgcgctgtggcgtggagaaaaag
ttccacgagctgcaggagccactgaagaaacgccggagcaacttgatggcctcacgtgag
atccaccagttcaaccgtgacgtggaggatgagattctctgggttgaggagagaatgcca
atggccacatctacagaacacggcaataatttgcaaactgttcagcttctcattaagaag
aaccagactcttcaaaaggagatccagggtcaccagccacgttatgatgacatttttgag
aggagcacacatatcttaaaggacaacagtcctgtcagtgcaacaatccgccagcggtta
gatgagctaaagcggctctggcacttgatccaggaggaagtggaaaaacgccacagacgc
ctagaggaagcgcacaaagcccagcaatactactttgatgcagcggaggctgaggcatgg
atgagcgagcaggagctgtacatgatgtcagaagaaaaggcaaaggatgagcagagctct
gtggctatgctgaagaaacaccagatcctggagcaggcagtggaggactatgctgagaca
gtgcaccaactctctaaaaccagcagggccttagtggctgctggacacccagaaagtgag
agaatcagcatgcgacagtctcaagtggacaagctgtatgccggtctgaaggacctgtct
gaagaaagacgtgggaagcttgacgagagatcctgcctgttccagctgaaccgtgaggtt
gatgatttagagcagtggatcgcggagagagaggtggtggcaggttctcacgagcttggt
caggactatgaacatgtcactatgctacaggagcggttccgagagtttgcccgtgacacg
ggaaatattggtcaggagcgtgctgacacagtcaacaaaatggcagatgaactgatcaac
tcgggtcacgcagacgctgccaccattgctgagtggaaggatgggctcaatgaggcttgg
gccgacctgctggagttaatcgacactcgcacgcagatcctggctgcgtcctatgaacta
cacaagttctaccatgatgccaaggaggtgcttggacgcatcttagacaaacacaagaag
ctcccagaagagttaggcagagaccagaacactgtagaggcactgcagagaatgcacacc
actttcgaacatgacatacaggctttgggaacacaggttaagcagctgcaggaggatgcg
gcacgtttgcagtcagcctatgcaggagataaagctgaggatatccagaggcgtgaggct
gaggtgctggaggcctggcgttctctgctggaagcatgcgacggccgccgtgtgcgtcta
atcgacaccaatgacaagttccgcttctttagcatggtgcgagacctcatgctttggatg
gaggatgtcatccggctcattgatgcacaggagaaaccaagggatgtttcttccgtggag
cttttaatgaacaatcaccaaggcatcaaggctgaaattgatgctcgcaatgacagcttc
acaacctgtgtcgagttaggaaaaactctactttcacgaaaacactacgcttctgaagag
atcaaagaaaagttactccagctgacagacaagaggaaagagatgattgacaagtgggaa
gaccgatgggaatggctgcgactggttctggaggtgcaccagttctcacgggatgcaggt
gtggctgaggcatggctgctgggccaggagccatatctgtccagtcgagagatgggtcag
agtgtggatgaggtggagaagctcatcaagaggcacgaggcgttcgagaagtcagccgcc
acttgggaggagcgttttgctgctctggagaggcttaccactatggaattactggaagtg
agaagacagcaagaggaagaggaaaggaaaagacaggcacaacctgtagaagctccccct
ggtgacacagcatcaccacaacagagagagtgtgagcaggtatctcagaatggaccacca
ccagagcaggactctccccgggatattcctgtgctcacgtccttgctgagtaccaatagc
aaggaggacacaggaggaggtgatgtagttaatggggtggcagagcccagtccaagctcc
tccccaacaggaagtcgcaaggggaaagcaggtcaagctgctacactaccaacgaagtcc
caggacacagcttcagcgcagattgagggattcctgaaccgcaaacatgagtgggagggt
cacaacaagaaagcttccaatagatcttggcacaatgtctactgtgtgataaataaccaa
gagttgggcttttacaaagacagcaaaagtgctagtcagggaataccataccatggtgaa
gttcccattagtctgaaggaatccacatgtgaggttgcccttgactacaagaagaagaaa
catgttttcaagctcaaaatttcaaatgggaatgagtatctcttccaagccaaagatgat
gaggagatgaactcatggatccaggcgatctcatgcaagacaccctccgagatcagcagc
catagcactcccgcctcgggacgcactcaaaccctgcccacctctgtaagcatgggtgct
gagtccagccctggcaagcgggagaaagacaaagagaagcgcttcagccttttcaagaag
aaatag
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integrated database retrieval system
