Ictalurus punctatus (channel catfish): 108262750
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Entry
108262750 CDS
T04658
Name
(RefSeq) ras-related protein Rab-33B
KO
K07920
Ras-related protein Rab-33B
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108262750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108262750
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108262750
04031 GTP-binding proteins [BR:
ipu04031
]
108262750
Membrane trafficking [BR:
ipu04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab GTPases
108262750
Others
Specific organelles associated proteins
Auto phagosome
108262750
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
108262750
GTP-binding proteins [BR:
ipu04031
]
Small (monomeric) G-proteins
Rab Family
Rab33
108262750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ras
Roc
Arf
Gtr1_RagA
GTP_EFTU
SRPRB
G-alpha
MMR_HSR1
AAA_22
ATP_bind_1
PduV-EutP
NPHP3_N
AAA_16
NACHT
Motif
Other DBs
NCBI-GeneID:
108262750
NCBI-ProteinID:
XP_017318537
UniProt:
A0A2D0QJQ4
LinkDB
All DBs
Position
3:complement(29063068..29067520)
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AA seq
214 aa
AA seq
DB search
MDSCEFWIPVVCRTCKIIVLGDAGVGKTSLTQLYCTGHFPEKTDSTIGVDFRERVLHVGG
EKIKVQLWDTAGQERFRKCMVQHYYRNVHAVVFVYDVTNVASFRSLPLWMEECQQHLLGP
DVPRVLVANKADLVTLNVASTIEQARHLAEVHSMPFYLYSAKSGNREQVDAIFSKLVLQI
TRQRRKKTEVVRSFKLTPKVNVEEEKKEKWTCNC
NT seq
645 nt
NT seq
+upstream
nt +downstream
nt
atggattcgtgcgagttttggatcccggttgtatgtcgcacctgtaaaataatcgtgctc
ggagacgccggtgtgggaaagacgagtctgactcagctctactgcaccggacacttcccc
gaaaagaccgactccaccatcggcgtggacttccgagagagagtgctgcacgtggggggc
gagaaaatcaaggtgcagctgtgggacacggcgggtcaggagcgttttcgcaagtgcatg
gtacagcactactaccgcaatgtacacgcggtcgtctttgtctatgacgtcactaatgtg
gcttcgttccgcagtctgcccctctggatggaggaatgtcaacagcacttgcttggacca
gatgtgccccgtgtccttgtggctaacaaagctgatttggtgaccttgaacgtggcgtcg
accattgagcaagcacgacacttagctgaggtccactcgatgcccttctacctctattca
gctaaaagtggcaacagagagcaggtggacgccatcttcagcaaactggtactgcagata
actaggcaacgaagaaaaaaaacagaggtagtcaggagttttaaactgactccaaaggtc
aacgtcgaggaagaaaaaaaggagaaatggacctgcaactgctga
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