Ictalurus punctatus (channel catfish): 108262778
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Entry
108262778 CDS
T04658
Symbol
ssrp1b
Name
(RefSeq) FACT complex subunit SSRP1 isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108262778 (ssrp1b)
03036 Chromosome and associated proteins [BR:
ipu03036
]
108262778 (ssrp1b)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
108262778 (ssrp1b)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
108262778 (ssrp1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
SSrecog
POB3_N
HMG_box
HMG_box_2
SSRP1_C
HMG_WDHD1
YABBY
Motif
Other DBs
NCBI-GeneID:
108262778
NCBI-ProteinID:
XP_017318593
Ensembl:
ENSIPUG00000013988
UniProt:
A0A2D0QJI9
LinkDB
All DBs
Position
3:28048516..28070497
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AA seq
697 aa
AA seq
DB search
MTDILEFNDIYQEVKGSWNDGRLRFSKQMVVYKSSKTGKVDSIPVPELSQAQWRRVCLGH
GIKLNTSTGHVYKYDGFKDTDFEKISEYFKDNYKVELTEKDMCVKGWNWGTAKFNGPLLS
FEVSDTPVFEIPLSSVSQCTTGKNEVTLEFHQNDDTEVSLMEVRFYVPPTTGDEGADPVE
AFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV
LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDINLTLNMSEDEVERRFE
GKLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF
IYVHKPPVHLRFEEIACVNFARGTTTTRSFDFEIETKQGNQYTFSSIEREEYGKLFDFVN
AKKLSIKNRGFKEGMKVRDDMYSDSDEDQHDAYLERMKQEGKIREEANDSDDSEAGSDES
FNPGDEDDDVAEEYDSKASESESSAEDADSEEDRRKKPVKKAKTVKEGKHKKEKKTKDSS
APKRPMSAYMLWLNSSRDRIKAENPGISVTEILKKAGEMWKQLSKDKKEEWEGKAEEAKK
EYERAMKEYRESSGGTSKKAKKKGGKSEERKKKKVGGAREREKNRAAGNDSFKSPEFISS
EESSSESTRGKGRKRKGSDDEEKQASSTPSSEESGSD
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgactgacattctggagttcaatgacatttatcaggaggtcaagggttcctggaatgac
gggcgtctgcgtttcagtaagcagatggtggtgtataaaagcagtaagacgggcaaggtg
gacagtatccctgtcccagagctcagtcaggcccaatggaggagagtctgcctgggccat
ggcataaaactcaacaccagcaccggacacgtgtacaaatacgatggcttcaaagatact
gactttgaaaaaatctctgagtatttcaaagataattacaaagtggagctgaccgagaaa
gacatgtgtgtgaaaggctggaactggggcactgctaaattcaacggcccattgttgtcg
tttgaagtgagtgacactcctgtgtttgagatcccgctctccagtgtatcccagtgtacc
actggaaaaaatgaagtcactctagagtttcatcagaacgatgatacagaggtgtcactc
atggaggtgcgtttttacgtcccgcccactacaggagatgagggggcggaccctgtagag
gcatttgcccagaatgttctttctaaggcagatgtgatccaggctacaggagacgctgtg
tgtattttcagagagctgcagtgtctcacacccaggggaaggtatgatattcgtatctac
cccaccttcctgcatctgcatggtaagacgtttgattacaagatcccctataccacagtg
ctccgcctcttcctgctcccacacaaagaccagagacagatgttcttcgtgatcagtctg
gatccccccattaaacagggacaaacccgctaccactttctcatcctgctattttccaag
gacgaagacatcaacctcaccctcaacatgagcgaggacgaggtagagaggcggtttgag
ggaaagctgactaagaacatgtctggctctctatatgagatggtcagcagggttatgaag
gctctagtcaacaggaagatcacagtgcctggaaacttccagggtcactctggtgctcag
tgtatcacttgctcctataaggccagctcagggctgctgtatcctctggagagaggcttc
atctacgttcacaagccgccggtgcacctgcgctttgaggagatcgcctgtgtgaacttt
gccaggggcaccacgaccacacgctcctttgactttgaaattgagaccaaacagggcaac
cagtacaccttcagcagtattgaaagagaagagtatggaaagttgtttgattttgtcaat
gctaagaaactgagcatcaagaacagaggcttcaaagagggtatgaaggtcagagacgac
atgtacagtgactcggacgaagatcagcatgacgcttacctggagcgcatgaagcaagag
gggaagatccgtgaggaggccaacgacagcgatgactcagaggctggcagtgatgaatca
tttaaccccggagatgaagatgatgacgttgcagaagagtatgacagtaaagcctcagaa
agtgaaagtagtgctgaagatgcagacagtgaagaagacaggaggaagaaaccagtcaag
aaggccaaaactgtgaaggagggaaagcacaaaaaagagaagaagacgaaggacagcagc
gcccccaagcggccaatgagtgcctatatgctgtggctaaactccagcagagatcgcatt
aaagcagaaaaccctggaatctcagtcactgagattttaaagaaagccggtgagatgtgg
aagcaactgagcaaagacaagaaagaggagtgggaagggaaagccgaggaagcaaagaaa
gaatacgagcgagcgatgaaagagtacagagaaagcagtggaggcacctcaaaaaaggca
aaaaagaaaggaggaaagagtgaggagaggaagaaaaagaaggtaggtggggcaagggag
agagagaagaacagggcagctgggaatgacagctttaagagtccagagttcatctccagt
gaggagagttcgtccgagtccacccggggaaagggccgcaagcgcaagggctcggatgat
gaagagaaacaagcgtccagcactcccagctcagaggagtctggctcagactga
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