Ictalurus punctatus (channel catfish): 108262836
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Entry
108262836 CDS
T04658
Symbol
zgc:152968
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108262836 (zgc:152968)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ipu03009
]
108262836 (zgc:152968)
Ribosome biogenesis [BR:
ipu03009
]
Eukaryotic type
Pre-60S particles
RNases
108262836 (zgc:152968)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
UPF0184
Pox_B6
YwqH-like
Motif
Other DBs
NCBI-GeneID:
108262836
NCBI-ProteinID:
XP_017318678
UniProt:
A0A2D0QJT1
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Position
3:31825367..31841083
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AA seq
1225 aa
AA seq
DB search
MFPSAGLFSETDCPFLTWGGCERPYCPYKHIKEEDRTGVCAGSARATAEKGHGNHTAARR
NFHNQEQSHTCLSELERINKQIEAVRNEVEKEQKRLSRYQSEQAESAGASSEEYLVTRKT
LSKDQNGNQLKCKKATGGARKYVVDRTKPKTDLEYDPCSNFSADLRSGSSTDKMKSTNKA
DVEHDQRDKGKGKSVSADPVPSPPCNFEDSDEEGELVIDIPTFENDGNKGSPIQSSSASE
NAHFMNITSESSEMAHLDTDIENKAEKIKPLKTGMTSISEQQESLNMETDLVKRRHPMLQ
KEKMPSVRVLAVGSIPIEDEQKPSVHPRMAKEEAESSKGMMEIDASPAENNQVLHKSLKQ
NSAASKNDECEEKILNYATVNSPELHEHARSSSVACFSQVFQSEKPTPANSVNAGVHEEK
AQDIENVLDDISICLDHLRRESENITCLQDVDALLLDPVHSAPSCSKIHGDYSLQPVAQK
LQRQIEPEIKPNNWLSGYVNKMDTMPLTHSEIPQKTSVFQDYPSTTSSLPAINKDPGSCK
NIPTSVETNCPFAHKVPAEPVQNVPLYISGTDTAMVPSPQMELNPAATSMDLTGGQILEK
PPALLGVTDDKITVDSSSSEELNYSDLDLSESDPMEECYRIFMEANQAEDPTVQGDMPEE
VSKMSEAEMVKPALAEKKRVAHIAKFEVSKSKAQVIVPLRDGGSQLPMPSRSQQCQKRAT
SLTAAVKGCQSFIAANAPKRVLTSTVIHPTAVPNNYANIFPVGATWQIGPNLHLIVPEGS
CAVPVTLIPAVAMPAARPVHPLAPKPQPTKPANYTPAKSIPTKRKAKGRSEVGVKVPHDV
RQRYVNLFVEEFLKTSATVQDAFEKALAEEKTLFDRSVNKLKYLSIAVNALKRLKNQNAA
PAKFSSERDAQASRGNVPLSSQALLQNGDTTLYDQLKEHVLTEAMLRENNYPHKHPDKPG
FAIQYGDTKKGSADVSRRICCRCGTSFCISQAGKHTRKEECNYHYGKVMENRVPGGVETR
YSCCENAVGSPGCQVFKLHVHDAVSLQGFVSSLSQTHAGCPGIYAIDTEMCYTTQGLELV
RVTVVNSSLQVIYDTFVKPTNEVIDYNTRFSGVSEEDVKNSSSSLQDVQAVLLSFISEGT
ILVGHGLENDLSALKIIHSTVVDTSVVFPHRLGPPHKRQLRSLTAEYLRKIIQESVEGHD
TKEDATACMELMLWKVKEDGKGKRW
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgttcccttccgctggactcttctctgaaaccgactgtccttttctcacttggggcgga
tgtgagcgaccttactgtccatacaagcacatcaaagaagaagaccgcacaggtgtttgt
gccggaagtgcgcgcgcgacagctgaaaaaggtcatggcaatcataccgctgctagaaga
aacttccacaaccaggaacagagccacacttgtctttcagagctggaaaggatcaacaaa
cagattgaagcagttagaaatgaagtggagaaggaacaaaaaagactgtcccgctaccag
tctgaacaggctgagagtgccggtgctagctcagaagaatatcttgtgaccagaaaaact
ttgtctaaagaccagaatggaaaccagctaaaatgtaagaaggccaccggtggtgcccgc
aaatatgttgttgatcgcaccaaacccaaaactgatctggaatatgacccttgttctaat
ttttctgctgatctgcgatctggcagttcaacagataaaatgaagtcgaccaataaagct
gatgtggaacatgatcagcgggacaaaggaaagggtaagagtgtgtctgctgatccagtt
cccagtcctccttgcaattttgaggattctgatgaggagggggaactagtcattgacatt
ccaacctttgaaaatgatgggaacaagggatctccgatacagagctcatcagccagtgaa
aatgcacattttatgaatataaccagcgaatcttcagaaatggcccatcttgacactgac
atagaaaacaaagcagaaaagattaagccattgaagacgggtatgactagcatcagtgaa
caacaggagtctttgaacatggagactgatttggtaaaacgaagacaccccatgctgcaa
aaggaaaaaatgccttctgtaagagtactcgctgttggaagtatacctattgaagatgaa
caaaaaccctcagttcatcccaggatggccaaggaagaagcagaatcatccaaggggatg
atggagattgatgcctcacctgcagaaaataatcaagtgcttcataagagcttgaaacaa
aactctgctgcatccaagaatgacgaatgcgaggagaagatcttgaactatgcgactgtc
aattctccagaattgcatgaacatgcaaggtcctcttcagtggcatgtttttcacaggtt
ttccaatcggaaaaacctactcctgcaaacagcgtgaatgctggtgttcatgaagagaaa
gcacaagatattgaaaatgttctagacgatatttccatttgcctggaccacctgagacgt
gaaagtgagaacatcacttgccttcaagatgtggatgctctcctccttgaccctgtccat
tctgctcccagttgctcaaagatacatggagattattctttacagcctgtcgcacaaaag
ctgcaaaggcaaatagaaccagagataaaaccaaataactggctctcgggttacgttaac
aaaatggacaccatgccccttacacactcagagatcccacaaaagacatcagtatttcag
gattacccttccaccacttcctctttaccagccataaataaggatcctggatcttgcaag
aacattccaacttctgttgaaacaaactgcccatttgcacataaagtcccagctgaacct
gttcagaacgtacctctgtacatttctggaactgacacagcaatggtcccttctccacag
atggagctaaacccagctgctacatctatggatttgactgggggtcagatcctggagaaa
ccacctgctctactgggtgtaacagatgataagataacagttgactctagttcttcagaa
gagctcaattattcagacctagacctttcagagagtgatccaatggaagagtgctacaga
atctttatggaagccaaccaggctgaagatcccacagttcaaggtgacatgccagaagag
gtttcaaagatgtctgaggctgagatggtcaagccagctcttgctgagaaaaagagagta
gcccatatagcaaagtttgaggtcagtaagagcaaagcacaggtcatcgtgccccttaga
gatggcggttcccagctgcccatgcccagccggagtcagcagtgtcagaagagagcaaca
tctctcacggcagcagtgaaagggtgccaatccttcattgcagccaatgcacccaagcga
gtcctcacatctactgtcattcatccaactgctgtgccaaacaactatgcaaacatcttc
ccagttggagcgacctggcaaatcggcccaaaccttcacctgattgtccccgaagggagc
tgtgctgtaccggtcacactaatccctgctgttgctatgcctgcagcacgtccagtccat
ccactagccccaaaaccacagcctaccaaaccagccaactacacacctgcaaagtcaatt
cccaccaagcgcaaagcaaaaggacgatcagaggttggcgtaaaggttcctcacgatgta
cggcagcggtacgtaaatctgttcgtggaggagttcctgaaaacatccgccaccgtgcaa
gatgcctttgaaaaggccctagcagaagagaagactttgtttgatcgcagcgtcaataaa
ctgaagtatctaagcatagcagtgaatgcactcaagaggcttaaaaatcaaaatgccgct
cctgccaaattttccagtgaaagagatgcacaagcgtctagaggaaatgtgccactcagt
tctcaagcactcctgcaaaatggtgacaccacactatacgatcagctgaaggagcatgtt
ctaaccgaggccatgttgagggagaataactatcctcacaaacaccctgataaacctgga
ttcgccattcagtatggtgacaccaaaaagggcagcgctgacgtttccaggagaatctgc
tgtcgctgtggaacttctttctgcattagccaggcaggaaagcacactcgcaaagaagag
tgcaactatcattatgggaaagtcatggaaaacagagtaccaggaggtgtggagacgcgc
tatagctgctgcgagaacgcagtcgggtcgcctgggtgccaagtgttcaagctccatgtc
catgatgcagtgagtctccaaggctttgtcagcagcctctctcagactcatgcgggctgc
ccagggatttatgctattgatactgaaatgtgctataccacgcagggtctggaactggtg
agggtcacggtggtgaacagcagtctgcaggtcatctatgacacctttgttaagcctact
aatgaggtcatcgactacaacaccaggttctcaggagtcagtgaggaggatgtgaagaac
agcagttcatctttgcaagatgtgcaagctgtgcttttgagcttcatcagcgagggaacc
attctcgttgggcatggtttggaaaatgatctctctgctctgaaaattatccacagcacg
gtggtcgacacgtctgtggtgttcccccatcgcctgggtccgccgcacaagagacagctc
agaagcttgacagccgagtatctgaggaagataatccaagagagcgtggagggacatgac
accaaagaggacgcgacagcgtgcatggagctcatgctctggaaggtgaaagaggatggt
aaagggaagagatggtga
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