Ictalurus punctatus (channel catfish): 108262902
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Entry
108262902 CDS
T04658
Symbol
cdhr1a
Name
(RefSeq) cadherin-related family member 1
KO
K16501
cadherin-related family member 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ipu04515
]
108262902 (cdhr1a)
Cell adhesion molecules [BR:
ipu04515
]
Cadherins
Cadherin related
108262902 (cdhr1a)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Motif
Other DBs
NCBI-GeneID:
108262902
NCBI-ProteinID:
XP_053535018
Ensembl:
ENSIPUG00000024607
UniProt:
A0A9F7REI3
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Position
3:20134778..20151759
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AA seq
862 aa
AA seq
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MADSRMKSKANGLISKTGSFFSRFFIAHFCFISLSDYAPYFYDNGPHSNGNLAFFSLSED
TPKGTHIYVLNGTDPEGQPVRYGLAFDPGSKEYFSVDPISGIVTLKEELDREIQDEIEVL
VSISDEFNNVVEKVRVFVMDANDEEPRFQNLPSTVDVPESTPSGSSIYKVQALDRDTGSG
GSVTYFLQSTGPNTKFAIDHYSGVLRIKEGEALDYESVRTHFVTVVAKDGGGSYNGREQV
MSSSATLTINVIDSQDTPPSFVGTPYFGYVYEVSSPGSEIFTVFAKDGDVETPNPIVYSI
QSGADGVFGINKTSGCITLLAYPDHLRKEMFNIQVKASEVNSQGSVMDFAITTVTIRVVD
LNNHPPTFYGENGPQDTFELTMYEHPPEGEILRGLRITVNDSDQGANAKFNLRLVGPGHM
LQMVPRTVLNEAQVTLLVEDSTAIDYEKFHFLTFKILAVEIDTTERFSATADIVIHLLDT
NDNVPSFSSDFYIARVPENSPGGSNVVSVTAKDPDSGLWGVVKYSIHGPGSDLFFIQSDS
GIIYTQPWASLDAEVKSKYNFFVKAEDTEGKYSLAEVFVTVLDLNDHPPEFNENILEKTM
IIGAPVKIEAIDDDAEEPNNVIEYSIMKAEPDNIFDINADTGEIKLKPYIKSMDIVQNIT
NQKDCTWSVVVQARDRGSPSFSTTTLVKIDITEATQLNGPLASFLMKSRENPMQILGMIA
AVIIALVFVTVLISTATFMRNKKSNKILPSRRIIRKKPRQRKQWNFHNPFKQQNNSERFM
KESEVAENVNCNNNSVGVQQSLPLPPPLPGYSRLGERRWVVPSIPETVAKRKCFRNNQSH
INTALVSELKLRLEQKKWMNQC
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggctgactcaaggatgaaaagcaaagcaaatggtctgatttcaaagactgggagcttc
ttctccaggttttttattgcgcatttttgttttatttcactgagtgattacgcaccatac
ttctatgacaatgggccacatagtaatggtaatctggcatttttcagtctttcagaggac
acaccaaagggaacgcatatatatgttctgaatggaactgatccagagggacagcctgta
agatatggcctggcctttgatccaggatctaaagaatattttagtgttgatcccatatct
ggaatagttactctgaaagaggaacttgacagagagatacaggatgagattgaggtcctt
gtcagtatttccgatgagtttaataacgtagtagaaaaagtgagggtgtttgtgatggac
gccaatgatgaggagccacggtttcagaacctgccctccactgtggatgtgccagagagc
acaccctctgggagcagtatatataaagtgcaggctttggacagagatacaggctcaggt
ggatctgtcacctactttcttcaaagcactggcccaaacactaagtttgctattgaccac
tacagtggggtgttaaggataaaagagggtgaggctctcgattatgagagcgtgaggaca
cattttgttactgtggtggcaaaggatggaggtggaagttataatggaagggaacaggtg
atgtcatcgtccgctaccctgacaataaatgtgattgacagtcaggacacgcctcccagt
tttgtcggtacaccatactttggctatgtttatgaagtctcttcacctggatctgaaata
ttcactgtttttgccaaagatggagatgtagaaactcctaatccaattgtttattctatt
cagagtggagctgatggtgtatttggcatcaacaaaacaagtggctgcatcactctccta
gcctatcctgatcatttaagaaaggaaatgtttaatatccaggtcaaggcttcagaggtg
aattcacagggaagtgtcatggactttgctatcaccactgtaactattcgagtagtggat
ctgaacaaccacccccctacattttacggtgagaatggcccacaggacacctttgagttg
accatgtatgaacatcctccagagggagagatactgaggggcttaaggattacagtcaat
gactcagaccagggtgcaaatgcaaagttcaacctaaggctggtggggccaggtcatatg
ctgcaaatggtcccaaggactgtccttaatgaagctcaagtcactttattagtagaagat
tccactgcaatagactatgagaaattccactttctgacattcaagattcttgcagtggaa
attgacaccacggagagattcagcgccactgcagatatagtcatacatttgcttgacact
aacgataacgttccaagtttctcctctgatttctatattgcacgagtcccagagaactca
ccaggtggctccaatgttgtgtctgtgacagctaaggatccagattctggtttgtggggt
gttgtcaaatactccatccacggcccaggatcagatcttttcttcatccagtcagattca
gggatcatctacactcagccctgggccagtctggacgctgaggtgaaatccaagtacaat
ttctttgttaaggcagaggacacagagggaaaatacagccttgctgaagtttttgtcaca
gttctggatctcaatgatcatccaccggagttcaatgagaatattttagagaaaacaatg
attattggtgcacctgtgaaaatagaggcaatagacgatgatgcagaggagccaaacaat
gttattgagtattccatcatgaaagcagaaccggacaatatctttgacatcaatgcagat
acaggagaaatcaaattgaagccctacatcaagtcaatggacatagttcaaaacatcaca
aatcagaaagactgcacctggtctgtggtggtccaggccagagacagaggctctccgtct
ttcagtacaaccacacttgtgaaaattgatatcacagaagcaacacaactcaatggccca
ttggcatccttcttaatgaaaagtagagaaaatcccatgcaaatccttggcatgattgca
gctgtcattatagctttggtttttgtgacagtcttgatctctacagctactttcatgcgt
aataaaaagtctaacaagatcttgccttctcgacggatcatcagaaaaaaacctaggcaa
cgcaagcagtggaacttccataatcccttcaaacaacagaacaatagtgaaaggttcatg
aaagaatctgaggtcgcagagaatgtcaactgtaacaataacagtgttggtgtacagcag
tccctccctcttccacctccactgccaggctattccagactcggagagcggcgttgggta
gtgccatccattcctgaaacagtggcaaagaggaagtgcttcaggaacaaccagagccac
atcaacacagcactggtttctgagctcaaattaagacttgaacagaagaaatggatgaac
caatgctag
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