Ictalurus punctatus (channel catfish): 108262991
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Entry
108262991 CDS
T04658
Name
(RefSeq) RNA polymerase-associated protein RTF1 homolog isoform X1
KO
K15178
RNA polymerase-associated protein RTF1
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108262991
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
108262991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Plus-3
Motif
Other DBs
NCBI-GeneID:
108262991
NCBI-ProteinID:
XP_053535306
Ensembl:
ENSIPUG00000023379
UniProt:
A0A9F7TJN7
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All DBs
Position
3:complement(1066345..1076026)
Genome browser
AA seq
680 aa
AA seq
DB search
MVNVKKRKGRVVIDSDSEDSASDDNLDQELLSLAKRKRVDSEEPEEPVSKPAASTDSETS
DSDDEWTVGGTKAKKKVKPGKGAEKKNPTKKKVNKAASSGSSDGDSSAESSAPEEGEVSD
SESNSSSSSSDSDSSSEDEVFRDGYGDDLMGDEEDRARLEQMTEKEREQELFNRIEKREV
LKRRFEIKQKLKTEKKKVKEEKKKKKQEEEQEKKKLSQVTDTQVVMSHNKERRSKRDEKL
DKKSQAMEELKAEREKKKNRTAELLTKRQPLKASDVYSDDEEEEEEDDDKSSVKSDRSSR
LSSSDEEEEKEATPPKSQPVSLPEELNRIRLSRHKLERWCHMPFFAKTVTGCFVRIGIGN
SSSKPVYRVAEIVDVVETAKVYQLGSTRTNKGLQLRHGNDTRVFRLEFVSNQEFTESEFM
KWREAMHGGGMQIPTLDEITKKEQSIKEAVNYKFNDKDIEDIVKEKDRFRKAPPNYAMKK
TQLLKEKAMAEESGDGDKVKMLQDQLNELEERAEALDRQRTKNISAISYINQRNRSWNIV
ESEKALVAEGQNSKNQQMDPFTRRQCKPTMVSNARDPSVHAAILAHLNQKYGSGSGQDNA
QQINKQQGSANQREKDVTKTTSDLSEDLFKVHDFDVKIDLQVPSAETKSLSVSSNSLPVK
DGAPRRSLNLEDYKKRRGLI
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggtgaacgtaaagaaacggaaaggtcgggtcgtcattgattccgactcggaagacagc
gcgagcgatgacaatttggatcaggagctgctgagcttggccaagaggaagcgtgtggac
tcggaagaacccgaggaacccgtcagcaaacctgccgcgtctacagactccgagacgtct
gacagcgacgatgagtggactgttggaggcaccaaagccaagaaaaaggtgaagcctgga
aaaggggcagaaaagaagaaccccacgaagaagaaggtgaacaaggccgcttcgtcaggg
agctcggatggagacagctcagccgagagctccgcccctgaggaaggcgaggtgtccgac
tcggagagcaacagctcctcgtccagctcggattcggactcgtcctcggaggacgaagtg
ttccgggacggatacggagacgacctgatgggggacgaagaggaccgggcgcggctggag
cagatgactgagaaggagagagagcaggagcttttcaaccgtattgagaagagagaggtg
ctcaaacgcaggttcgaaatcaagcagaaactaaagacggaaaagaagaaggtcaaggag
gagaagaagaagaagaagcaagaggaagagcaggagaagaaaaagctgtctcaggttaca
gacactcaggtggtgatgtcccataataaagagaggaggtcgaagagagacgagaagctg
gacaagaagtcgcaggccatggaggagctgaaagccgagcgagagaagaagaagaacaga
acggccgagctcctgaccaaacgacagccgctgaaggccagcgacgtgtactccgacgac
gaggaggaggaggaggaagacgacgataagtcctcggtaaagagcgaccgcagctcgagg
ttgtcgtcctctgacgaagaagaggagaaagaggcgacgccccctaagtctcagccggtg
tcattgccggaggaactgaaccgcatccgtctgtcacggcacaaactggagcgctggtgt
cacatgcccttcttcgctaaaacggtcaccggctgcttcgtacgcatcggcatcggcaac
agcagcagtaaacccgtctacagggtggccgagatcgtagatgtggtggaaacggcgaaa
gtctaccagctcggctcgactcgaacaaacaaggggctgcagttacgacacggcaacgac
acccgagtgttccggctggagtttgtgtccaatcaggaatttacagagagcgagttcatg
aagtggagagaagcgatgcacggtggaggaatgcagattcctaccctggacgagatcact
aaaaaagagcagtccatcaaagaagccgtcaactacaaattcaacgacaaagacatcgag
gacatagtgaaagagaaggacagattccggaaggcgccgccgaactacgccatgaagaaa
acgcaactcctcaaagaaaaggcgatggcggaggagagcggcgacggagataaggtgaag
atgttgcaagatcagttgaacgagctggaggagagagccgaagcattagacagacagaga
actaaaaacatttccgcgatcagttacatcaaccagaggaaccgcagctggaacatcgtg
gagtctgagaaagcgttagtggctgaaggtcagaactccaaaaaccagcagatggaccct
ttcacccgacggcagtgcaaacccaccatggtgtccaacgccagagacccgtcggtccac
gctgctattctcgcacatcttaatcagaaatacggttcgggctccggccaggacaacgcg
cagcagatcaacaaacagcagggttcggcaaaccagagggaaaaagacgtcacaaaaacc
accagcgacctctctgaagacctgttcaaagttcacgacttcgacgtcaaaatcgacctg
caggtccccagtgctgagacaaagtccctgtcagtgagctccaactccctgccggtgaag
gacggagcccctcgccgctccctcaacctggaggactacaaaaagagacgaggcctcatc
tga
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