Ictalurus punctatus (channel catfish): 108263064
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Entry
108263064 CDS
T04658
Symbol
brf1a
Name
(RefSeq) BRF1 RNA polymerase III transcription initiation factor subunit a isoform X1
KO
K15196
transcription factor IIIB 90 kDa subunit
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108263064 (brf1a)
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIB
108263064 (brf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
BRF1
Zn_Ribbon_TF
Cyclin_N
Motif
Other DBs
NCBI-GeneID:
108263064
NCBI-ProteinID:
XP_017318981
Ensembl:
ENSIPUG00000023313
UniProt:
A0A2D0QMN2
LinkDB
All DBs
Position
3:1152763..1191971
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AA seq
676 aa
AA seq
DB search
MRRCQNCGGTEVDVDQARGDAVCMGCGSVLEDNIIVSEVMFVESSAGASSAVGQFVASDS
QGNVPSLGGNLTGMGRESRAQTLQNAKRNINHLGRQLQMNQHCLDTAFNFYKMALCKHLT
RGRKSSHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGRTFLVLARELCINAPAIDP
CLYIPRFAHMLEFGEKSHEVSMTALRLVQRMKRDWMHTGRRPSGLCGAALLVAARMHEFR
RTIKDVIGVVKVCEATLRKRLNEFEDTPTSELTIDEFMRVDLDQECDPPSFKDGQRKLRL
QKIEEELAKKIDDVQGEICGYQDEIEMELESRRPKSRGIFAAYGKNDDAVSMTSSLGVCD
LDDEDEDLRAAVSRLNEDPPGDGEERCDEERRGATEEERDSPNKRPSLEALLGPLPTAAS
LGLSDSIQKCVGEEKENENENEQGSDGGELDLSGIDDDELEWYILNEKEVKIKTDLWMLE
NADYLKEQKEKEEKIAKEKELGIHKEKKRRKPAQRRAPINASTADEAIEKMLEQKRISSK
INYDVLKDLNRSGTKSPPPEPKESPGRAAQRRTPSARPRRVNEFSASLAEPASNFGKRLR
PLISAQLAKKPLLDQMVSEAPAAPAAVTHNAVVVESGPVAYEEPKEEEEEDEEEQCCSAI
QLMGGDDYGYDFDDDD
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgcggaggtgtcagaattgcggtgggacggaagtggacgtggaccaggctcgcggtgac
gccgtgtgtatgggctgcggctccgtgctcgaggacaacatcatcgtctcggaggtgatg
ttcgtggagagcagcgccggagcctcgtcagccgtcggccagttcgtggcctcggactct
cagggcaatgtcccgtctctgggtggaaacttgacggggatgggaagagagtccagagcg
cagacgttacagaacgcaaagaggaatataaatcacctgggccgccagctgcagatgaac
cagcactgcctggatacggccttcaacttctacaagatggcgctgtgtaaacacctgacc
cgaggcaggaagtcgtcccacgtcatcgccgcctgcctctacctggtgtgtaggactgag
ggcacgccccacatgctgctggatcttagcgatcttctgcaggtcaacgtgtatgttctg
ggaagaaccttcctggtgttggccagagaactctgcatcaacgctccagccatagatccg
tgtctgtacatcccccgcttcgcacacatgttggagtttggcgagaagagccacgaggtg
tccatgacggcgctgagactcgtacagaggatgaagagggactggatgcacacgggacga
aggccttcgggactctgcggagcagctctgctggtcgccgcccgtatgcacgagttccgt
cgcaccatcaaagacgtgatcggtgtcgttaaagtgtgtgaggccacgctgaggaagagg
ctgaacgagtttgaggacacgcccaccagcgagctgaccattgacgagttcatgagggtg
gatctggaccaagagtgtgacccgccctcttttaaagatggacagaggaagctccggctg
cagaagatcgaggaggaactggctaagaagatcgacgacgtccagggtgaaatctgcggc
tatcaggatgagattgaaatggagctggagagcaggcgaccaaaatccagagggatcttt
gcagcttatgggaaaaatgacgacgccgtgtccatgacgtcgtccctcggcgtgtgcgat
ctggacgacgaggacgaagacctgcgtgcggcggtgtctcgcctgaacgaagacccgccc
ggcgacggagaggagcggtgcgacgaggagcgacggggagcgacagaggaagagcgagac
tctccgaacaagcgtccgtctctggaagctctgctcgggccgctgcccaccgccgccagc
ctcggcctgtccgactccatccagaagtgcgttggagaggagaaggagaacgagaacgag
aacgagcaggggtcagacggcggcgagctggacctgagcgggatcgacgacgacgaactc
gagtggtacatcctcaatgagaaggaggtgaagattaaaaccgacctctggatgttggag
aacgcggactacctcaaagaacagaaagaaaaggaggagaaaatagcgaaagagaaagag
ctgggtatccacaaggagaaaaagcggaggaaaccagctcagaggagagcaccgatcaac
gccagcacggccgacgaggccatcgagaagatgctggagcagaaacggatctccagtaag
atcaactatgacgtcctgaaggacctgaaccgctccggcacgaagagcccgcctcccgag
ccaaaggagtctccgggccgcgccgcgcagaggaggacgccgtcagcgcgcccacgcagg
gtcaacgagttctcggccagtctggcagagccggccagcaacttcggcaagaggttacgg
ccactgatctccgcacagcttgctaagaagccactcctggatcagatggtgtctgaggct
ccggccgcccccgctgcggttacccacaatgccgtggtggtggagagcgggcccgtagcg
tacgaagagccgaaagaggaggaggaggaggacgaggaggagcagtgctgcagtgccata
cagctgatgggaggagatgattacggctatgattttgacgacgacgattga
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