Ictalurus punctatus (channel catfish): 108263269
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Entry
108263269 CDS
T04658
Name
(RefSeq) RRP12-like protein
KO
K14794
ribosomal RNA-processing protein 12
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ipu03009
]
108263269
Ribosome biogenesis [BR:
ipu03009
]
Eukaryotic type
90S particles
Other 90S particles
108263269
Pre-60S particles
Other pre-60S particles
108263269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP12_HEAT
DUF6461
Motif
Other DBs
NCBI-GeneID:
108263269
NCBI-ProteinID:
XP_017319404
Ensembl:
ENSIPUG00000000311
UniProt:
W5U672
LinkDB
All DBs
Position
3:19060554..19082008
Genome browser
AA seq
1284 aa
AA seq
DB search
MVKSGKLRSGTACKLKRWKKGHSSDSNPQTSQHRQAAKSRFFSRPKEKSDLTVDALKLHN
ELQAGSLERKQDGLEDVMEETTAFTERTSGTFLSGLSDCSNLTFRKVQRYWESNSAAHKE
ICAVLAAVTEVIRSQGGKETETEYFAALMMTLEAVESTESLAAVAYLLNLVMKRVPTPVL
IKKFSDTAKAFMDVMSKQATTESVSCVRWILSCLATLLRKQDLSVWSYPSTLQVYHGLLS
FTVHSKPKVRKAAQQGVCAILRGSDCMFGDNAPSHHPAAVTTSKYCIKEMEHAGGSKEDT
TTLHVLGLLKELITTFPLSSVKSCCETLLRLMTLSHVLVTACAMQAFHKLFSGKPNPSSM
SAELNAQIITALYDYIPSDNDLQPLLAWLAVMEKAHVHLSRLQSSLSLGHLPRLFSVSMS
CLLSPHTRVVSAATQTLKTLISECVAPHMAEIGPVLPSVSAGNGLYVCKMFSVVEEGLSY
RFHASWPFVLQILGCFYRAAGKHAHPVMMKSLQSLCDLRATPQFPFCGELDLAVGGAVES
MGPQVVLSAIPLLITGTDDDLEFPRSWLIPVIRDNVKNTQLAYFASYFLPLSSMLQLRAD
QLEKAGQKLLAKVHQTLQLQIWTMLPGFCTKPTDVVSSFKGIARSLGMAITERPDLRMCI
YQALRTLIRKSCETEEEKAEVGRFAKNFLPILFNVHTQQPAPGERDPSRPAVLATIKDYL
TVTDHKMVGSFLQKALERLSSPDSSEFTRHTVMDLVVAMSAFVDEEAMAQTYAQIKPHLE
SKESGIQKKAYRVLEEMCGGEREPCKRFVFANLEQLKVVLLDSLKSTSSPAKRPRLKCLS
HIVKQLNEEHKDFITALLPEVIICTKEVSVGARRNAYSLLVDIGDAFIRFCGNTKDALNE
YFGHVYIGLTGSVTMITCTVLALTRLVFQYKDSIDVSSLEQLLHNICLLLTCRTREIVKA
CIGFIRVIVDVKVLASQVSFILEGIGAMKDDMRRHCRTNLKIILTKLVRKFGCELVKSML
PAELHRLLVNIRKVEARTQRRKLLKKAEEEGSDSEEDTPKAKTDSIEDILAETDSDDSED
EKPKKGQKKQVKQKAQAWLKEGVSDEPLNFLDPKAAQRVLSTNPDFKKTRKIEHDFKVTS
DGRLIIKEEDDDDDDDGSKDDKEVDDILKEVGLKTKKRQKKKTENDLDDDMDIEPQMKYK
AGGSGIHRPLGGRQESGADYKAKKGKGDIKKTGKHDPYAYIPLKKAQLNRRKKAKLQGQF
KGMVRGAKKGALSGKRMQKNKRRA
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaatctggtaaacttcggtccggaacggcctgtaaattaaagcgatggaagaaa
ggacacagcagcgattcaaacccacagactagtcaacatcgacaagctgccaaaagccga
tttttcagtagaccgaaagaaaaaagtgatcttacggttgatgctctgaaactgcacaat
gagcttcaggcaggttctctggaaagaaagcaagatggcttggaggatgtcatggaggag
acgacagccttcactgagagaacatcaggcacatttctgagtggactgtctgattgctca
aatctgacttttagaaaagttcagcgatactgggagtccaactctgctgcacacaaagag
atctgtgctgtactggcagctgttacagaagtgattcgctctcaaggtggaaaggagaca
gagacagaatactttgctgctttgatgatgaccctagaggcggttgagagcactgaatcc
ctggctgctgttgcctacctactcaacctggtaatgaaaagggtgcctactccagtgttg
ataaagaagttctcagacacagcaaaggccttcatggatgtcatgtcaaaacaagccact
actgagtctgtgtcctgtgttcgatggatcttgtcctgcctggccactttgttgaggaag
caggatctctccgtgtggagctatccatccaccctgcaggtgtatcatggtctactcagc
ttcactgtgcactccaaaccaaaggtgcgtaaagcagctcagcagggtgtgtgcgccatc
ctgcgtggcagtgactgcatgtttggagataatgcgcccagccatcaccccgctgccgtt
accacatccaagtactgcattaaagagatggagcacgcaggaggtagcaaggaagatacg
accacgctgcatgtgctggggcttctgaaggagctgattacgacgtttcctctcagctca
gtgaagtcttgctgtgagactcttcttcgtttgatgaccctgagtcatgtgctagtgacg
gcgtgtgcgatgcaggctttccacaaactcttcagtggaaaaccaaacccctcctccatg
tctgcagagctcaatgcccagattatcacggctttgtatgactatatccctagtgacaat
gacttgcagcccctgctagcctggcttgctgtcatggagaaagcccatgtccatttatcc
aggttacagagctctttgagtctgggtcaccttcctcgtctcttttccgtttccatgtcc
tgtcttctttccccacacacacgagtcgtctcagctgccacacagactctgaagaccctg
atcagtgagtgtgtggcacctcatatggcagagattgggcctgttctacccagcgtatct
gctggtaatgggctttacgtctgtaaaatgtttagtgttgtggaggaaggcttgtcctat
cgcttccatgcatcatggccttttgtgctgcagatccttggctgcttctacagagctgca
gggaaacatgctcatcctgttatgatgaagagtctgcagtctctgtgtgacttgcgtgcg
acgccgcagtttccgttctgtggggagctggatttggcagtagggggtgcagtggagagc
atgggcccacaagtggtccttagtgctatcccactcctcatcactgggactgatgatgac
ctggagttcccacgcagctggcttatcccggtcatcagagacaatgtaaagaacacccag
ctggcatacttcgcctcttacttccttcccctgtcatccatgctacaactaagagcggat
caattggagaaggcaggacagaagctgttggcaaaagtacatcagacattacagttgcag
atctggacgatgcttcccgggttctgcacaaagcccactgacgtggtcagctcgtttaag
ggcattgcccgctcactcggtatggcaatcacagaacgccctgatctccgcatgtgcatc
tatcaggccctgcgcacactcatccgcaagagctgtgagacagaggaagagaaggcagaa
gtgggccgcttcgctaagaactttttgcccattctgtttaatgtgcacacacagcagcca
gcccccggagaaagagacccgtccaggccagctgtgctcgccaccatcaaagattacctg
acggtcacggatcacaagatggtaggctcatttctgcaaaaggccttggagaggctcagc
agccctgacagctcggagtttacacggcatactgtgatggatttagtggtggctatgtct
gcatttgtggatgaggaggctatggcacaaacatatgcacaaatcaaaccccacttggag
agtaaggagtctggtattcagaagaaagcgtaccgggtgttggaggagatgtgtggagga
gagcgagagccgtgtaagcgtttcgtctttgccaatctggaacagctcaaggtggtcctt
ctggatagtctgaagagtacatcttcacctgccaaaagacccagactgaagtgcctcagt
cacattgtgaagcagctgaatgaagaacacaaggacttcatcactgcacttctccctgag
gttataatttgcacaaaggaagtgtctgttggagcacgcagaaatgcctactccctcttg
gtggacatcggcgatgcctttatccggttctgtggaaacaccaaagatgccttgaatgag
tactttggccatgtgtacattgggctcactggatcagtcacaatgattacctgcactgta
ctggccctcacccgacttgtgtttcagtacaaagactccatagacgtatcgtcactggag
cagctcctgcacaacatctgcttgctgctcacctgcaggacacgggagattgtcaaggcc
tgtataggcttcatcagagtcatcgtggatgtaaaagttctagccagtcaagtgtctttt
attttggagggcattggcgctatgaaagacgatatgagaagacactgcaggacaaacctg
aaaatcattttaactaaattagtccgcaagtttggctgcgagctggtcaagagcatgctg
cctgcggaacttcacagactactggtgaacatccgtaaagtggaggccaggacacagaga
cgcaaactgctgaaaaaggctgaggaggaaggttcagacagcgaggaagacactcctaaa
gccaaaactgacagtattgaggacatcctggcagaaactgactctgatgactcggaggat
gagaagcctaaaaaaggccagaaaaagcaggttaaacaaaaggcgcaggcctggttgaaa
gaaggggtgtctgatgaacctctcaacttccttgatcctaaagcagcacagagagttctc
tccaccaaccctgactttaagaagactcgcaagattgagcatgacttcaaggtgacatca
gacgggagattgatcattaaagaagaggatgatgatgatgatgatgatggatctaaagat
gacaaggaagttgatgacatactgaaagaggttggcctgaagacgaaaaagagacagaag
aagaaaactgaaaatgatctggatgatgacatggatattgagccacaaatgaaatataaa
gctggtggcagtgggattcacagaccactgggaggaagacaggagtcaggtgctgattac
aaagctaagaaaggaaaaggtgacattaagaagacggggaagcacgacccatatgcttac
atcccgcttaaaaaggcccagctcaaccgtaggaaaaaggccaaactgcagggccagttt
aagggcatggtcagaggagcgaagaagggagcgctgtctggaaagagaatgcagaaaaat
aagaggagagcctaa
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integrated database retrieval system
