Ictalurus punctatus (channel catfish): 108263329
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Entry
108263329 CDS
T04658
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108263329
09123 Folding, sorting and degradation
03018 RNA degradation
108263329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108263329
03041 Spliceosome [BR:
ipu03041
]
108263329
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108263329
mRNA cycle factors
Stress granule specific factors
108263329
Spliceosome [BR:
ipu03041
]
Complex C
Other components
Complex C specific factors
108263329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
Motif
Other DBs
NCBI-GeneID:
108263329
NCBI-ProteinID:
XP_017319505
UniProt:
A0A2D0QPX2
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All DBs
Position
1:complement(28461449..28465244)
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AA seq
463 aa
AA seq
DB search
MNHEMMASLYVGDLHPEVTEAILARTFSLAGRVHSIRLCRDWRTRSSLSYAFVNFEQRAD
AERAREMFHLELLVGRPMRVQWSHRDPSSIGNLFIKNLDKSIDTLALFHTFSAFGKVLSC
KVVGDEKGSEGYGYVHFESAEAADFAMNRLNGKVLNNRKVFIERFKSREAHEAQVERQAY
PTHQNRQRTASMQAQNLAVSFSPSQKVEPRPDLLWAAQTIQPQYVQNIPDVVQPVSVHQQ
IGGTITSTSQAPCLNEECTTIITPTPDGTVPVTDTVPTIGTVQSVHSVPPVDTLPSVPVV
ETVPPVDSVSGLNSAADEVPAPPQAPDAAEITSTSISEVQQDKNTMDVPTYPPAGKRLTI
YMLKSSRLDDQIQMAHDHLLPLVKEIHPTQANKITWMLLEDANNFEIIDMIVYPELLHTK
VDEMDALLMARDTGYKPETLKMLFYNNNKKKNKKRKNKCNTIQ
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacgaaatgatggcctcactgtatgtgggtgatctgcaccccgaggtgacggaa
gccatacttgcgaggacgttcagccttgcaggccgcgttcactccatccggctctgcagg
gactggaggacccgctcctcactcagctacgcttttgtcaactttgagcagcgggccgat
gctgagcgagcaagggaaatgtttcatttggagctccttgtgggacggcctatgcgcgtc
cagtggtctcacagggatccatccagcattggaaacctgttcatcaagaacctggacaag
tcgattgacaccttggccctttttcacaccttctcggcctttgggaaggtcctgtcttgc
aaggttgtaggtgatgagaaggggtcggaagggtacggctacgtccattttgagtctgca
gaggcagcggattttgccatgaacaggctcaacggcaaagtgttgaacaaccgtaaagtc
ttcattgaacgctttaagtcccgtgaggcgcacgaggctcaggtggaacgtcaggcttac
cctacccatcagaacaggcagaggacggcgagcatgcaggctcagaacctggctgtctct
ttcagccccagccagaaagtcgagccccgcccggatctgctctgggctgcccagaccatc
cagccacaatatgtccagaatatacccgatgtggttcaacctgtatcagtgcatcagcag
atcggtggcaccatcacatcaactagtcaggcaccatgtttgaatgaagagtgtacaacc
atcattacaccaacacctgatggtactgttccagtgacagacacagtgccaactatagga
acagttcaatctgtacatagtgtcccacctgtagacactcttccaagtgtccccgttgta
gagacagttccacctgttgatagtgtttcaggtctaaattcagctgcagatgaggttcca
gctccacctcaagctccagatgcagctgaaataacttctacatccatcagtgaagtgcag
caggacaagaacacaatggatgtacccacatatccaccagctgggaagcgtctgactatc
tacatgttgaagtcatctcgcttagacgaccagatccagatggcgcatgatcacctgtta
cctctggtcaaggaaatccacccgactcaggctaacaagatcacctggatgcttttggag
gatgcgaacaattttgagatcatagacatgattgtataccctgagctcctgcataccaag
gtggatgaaatggatgcactcctgatggcgagggacactggatacaagccggaaaccctg
aagatgttattttacaacaacaataagaagaagaacaagaagagaaagaataaatgcaat
acaatacaataa
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