Ictalurus punctatus (channel catfish): 108263356
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Entry
108263356 CDS
T04658
Name
(RefSeq) polyadenylate-binding protein 1-like 2
KO
K13126
polyadenylate-binding protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108263356
09123 Folding, sorting and degradation
03018 RNA degradation
108263356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108263356
03041 Spliceosome [BR:
ipu03041
]
108263356
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108263356
mRNA cycle factors
Stress granule specific factors
108263356
Spliceosome [BR:
ipu03041
]
Complex C
Other components
Complex C specific factors
108263356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_Nup35
RRM_7
RBD_DEAH11
RRM_3
RGP
Motif
Other DBs
NCBI-GeneID:
108263356
NCBI-ProteinID:
XP_017319554
UniProt:
A0A2D0QMN0
LinkDB
All DBs
Position
1:15642778..15645995
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AA seq
304 aa
AA seq
DB search
MRRRSLSIWTFAQQSAFQKFSGSVFLREIISASFQMATLYVGDLHPDVTESMLLEKFSSV
GRLHNLRLCLNTGTSLQYAFINFQHRADAECALELLNFETLLGQPMRIMWSQSDSSLRNS
NEGNIFIKGLEKSIDSMALYDTFSTFGNILSCKVVCDENGSKGYGYVHFESAEAAETAIK
RLNGMLFNDHYVFITHFKSRQERQEQKEEERHPKPQHKFEQCVNLCLRNLDVSVDDERLH
KEFSPFGTVIHAKVMGTSGCSGRFGFVSFSSPEEATKAMSEMQGRMLDRRALHIRLIQRR
VRSH
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgaggagacgatcgcttagcatttggacatttgcgcagcaatcagcatttcagaagttc
agtggttcagtgtttctacgtgaaatcatcagtgctagtttccaaatggctacactctat
gttggcgatcttcaccctgatgtgaccgagtccatgctcctagagaaattcagctctgtc
gggcgacttcataatctccgcctctgcttgaacaccggcacatcactccaatacgctttt
atcaactttcagcatcgggctgatgctgagtgcgctttggagctgctcaatttcgaaacc
cttttgggtcagcccatgcgcatcatgtggtcccagagtgactcatccctcagaaacagc
aatgagggaaatatcttcatcaagggcctggagaaatccatcgacagcatggccctttac
gacaccttctccaccttcggcaacatcctctcatgcaaggtggtgtgcgatgaaaatggg
tccaagggatacggatatgtgcactttgagagtgccgaggctgccgagactgccatcaag
aggctgaatggcatgctctttaatgaccactatgtgtttatcacgcacttcaagtcccgc
caggagcgtcaagagcagaaggaggaagagagacatcctaaacctcaacacaagtttgag
cagtgtgtgaacctgtgtctgaggaatctggatgtctctgtggatgacgagcgtctacat
aaagagttctcaccttttggaaccgtcatccacgcaaaggtgatggggaccagtggctgc
tctggaaggtttgggtttgtaagcttctcctctccggaggaagccacaaaggcaatgagc
gagatgcagggaaggatgctggacagaagggcgctgcacatccgtctgattcagcgccga
gtccgaagccactga
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integrated database retrieval system
