Ictalurus punctatus (channel catfish): 108263600
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Entry
108263600 CDS
T04658
Name
(RefSeq) TATA-binding protein-associated factor 172
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108263600
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
108263600
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
HEAT_2
Vac14_Fab1_bd
TPR_Trm732_C
HEAT_MROH2B_C
HEAT_GCN1_C
TOR1L1_N
HEAT_EZ
HEAT_GCN1
Arm
Motif
Other DBs
NCBI-GeneID:
108263600
NCBI-ProteinID:
XP_053535773
Ensembl:
ENSIPUG00000018620
UniProt:
W5UEM2
LinkDB
All DBs
Position
3:25264680..25291919
Genome browser
AA seq
1861 aa
AA seq
DB search
MAVSRLERLFILLDTGTTPVTRKAAAQQLGDVVKLHPHELNNLLSKVLIYLRSPNWDTRI
AAGQAVEAIVKNIPEWNPAPKPKEESRAEDMSPEDSSTDRLSFYRFDISRLLRHGASLLG
SAGVEFEVQDDMSAEVDPKERLARQRKLLQKKLGLDMGAAIGMDTEELFNDEDLDYTCTA
NVNRSQTGKGAVFQSFRSNMPMQAAEFIDSEFRPGMSNRQKNKAKRMAKLVAKQRSRELD
PNEKSNDSFEGEPEEKRRKTTNVVIEQPAAENKVLIDNIPDNSSLFEETQEWPLESFCEE
LCNDLFNPSWEVRHGAGTGLREVLKCHGAGGGKLVGSTSEQLSQQHQDWLEDLVIRLLCV
FALDRFGDFVSDEVVAPVRETCAQTLGMALRHMTDCGVTMTVDVLLKLLTEDQWEVRHGG
LLGIKYALAVRQDLISQLLPRVLPAITDGLQDLDDDVRAVAAAALIPVVEGLVQLQPAKV
PFIVNTLWDALLELDDLTASTNSIMTLLSSLLTYPQVLHCSMQQSLTILVPRVWPFLRHT
IASVRRAALETLFTLLSMADQSCAMWLNPILQDMLRHIFQSCILESNQEILDLIQKVWGE
LLRQAPQQYVVAASCPWMGAWLCLMMQAPHIPIDINMLLEVKARSKEKASGKSRQGGPQV
KETVQEYIGGADTITEDPVSRDYVVTRARLMAAKLLGALCSCICDPRLNSSTQEIRPAES
LAQLLLFHLNSKSALQRVAVSMVLCEWASLQKECEVVSSVVQPRLLAILSEHLYYDEIAI
PFTRMQNECKQLIALLADAHIDVREKINCSVFTIDQANELVTSIFSEATASLNLKSRQLQ
SLDSKRQQACSTVAETSAEWQQMHLRVHTFAACAMVGLAALPDKLNPLVRPLMEAVKKEE
NTLVQGYAASSIARLLQLCTERTPCPNSKIIKNLCSSVCVDPMLTPNAECPVPPHTPPTQ
DGCKATVSEKDGMHHMVNKTKGIITLYRHQRAAFAITSKRGPAPKPPKTSPNDPPPGSSI
STETDESKKPILIQRRGAEFSLMTVARHFGPGLTKDLPCLWESMIGPLKALVDMLGCNSR
QLLEKGDLVAQELVNSLQVLEVTTGAMAQELISLLLEQLPLLCACLQHPYTAVRHMAARC
VGVFSKIATMETMSCFLEHVLPWFGAIDDRTKQEGAIEAMACVMEQLDVDIVPYIVLLVV
PVLGRMSDPSDSVRFMATQCFATLIRLLPLEAGIPNPPTMSDDLIRQKARERHFLEQLLD
SRKLENYTIPVPIKAELRKYQQDGVNWLSFLNKYKLHGILCDDMGLGKTLQSICILAGDH
YLRAQEYARTKAIDCCPLPSIVVCPPTLTGHWVDEVGKFCTKEYLNPLHYTGPPTERARL
QHQVKKHNLVVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAIKQLSANYRI
ILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAM
EALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVNVDDAFS
TAAQEDEDKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEHKRISEQLTSQNSSLRDI
QHAPKLSALKQLLLDCGLGSSGSSDVSTEAVVAQHRVLIFCQLKSMLDMVEHDLLKPQLP
TVTYLRLDGSVPAGLRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNP
MRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMSIANTVISQENSSLQSMG
TDQLLNLFTLDKDGKVEKSDAASSSSGKTSMKSVLDGLGELWDQQQYEAEYDLDNFMLSL
H
NT seq
5586 nt
NT seq
+upstream
nt +downstream
nt
atggctgtctcgaggctagagcgtctgttcatcttgttggacaccggcacaactcctgtg
acgaggaaagccgccgctcaacagctgggagacgtagtcaagctccatccacatgagcta
aataatctattatcaaaggttttaatatatttgaggagtcccaactgggacacgcgaatt
gcagctggtcaggcagtggaggccatagtgaaaaatattcccgaatggaaccccgctccc
aagccaaaggaagagtcccgagcagaagacatgtctcctgaggacagctctacagacaga
ctcagtttctacagatttgacatttcccgtttgctcagacatggagcttcgttgctcggc
tccgctggtgtagagtttgaagtacaggacgacatgtcggctgaagtggaccccaaggaa
cgactggcccgacagaggaagcttctgcagaagaagcttggtctggatatgggtgctgct
ataggcatggatacagaggagctatttaatgatgaagacttggactacacctgtaccgcc
aatgtaaatagatcgcagactggcaagggggctgtgttccagagtttccgcagcaatatg
cccatgcaggcagccgagtttatagactctgagttccggcctggcatgagcaatcgtcag
aagaacaaggctaaaaggatggccaagctcgtggcaaagcagagatccagagaactggac
cccaacgaaaaaagcaatgacagcttcgaaggagaacctgaagagaaacggcggaaaacc
acaaacgtagtcatcgagcagccggctgctgagaacaaagtcttaattgataacattccc
gacaactcaagtttgtttgaggagactcaagagtggcccttggagagcttctgtgaagag
ctttgtaatgacctctttaatccatcctgggaggtgcggcacggtgcaggcacaggcctg
agagaggtgctgaagtgtcatggtgcaggaggagggaagctggtgggcagcacttcagaa
cagttatcccagcagcatcaagactggttggaggacttggtcatcaggcttctatgtgtg
tttgctctggaccgctttggagactttgtgtctgatgaggttgttgcacctgtgagagaa
acttgtgcacagacactgggcatggccttgagacacatgactgactgcggtgttaccatg
accgtggacgttttgttgaagctgcttacagaggatcagtgggaggttcggcatggagga
ctgttgggcatcaaatacgcccttgctgtcagacaggatcttatttcgcaactgcttcct
cgagtacttccggccatcaccgacgggctccaggatctggatgatgatgtgcgtgcagta
gcagctgctgctcttatccctgtagtggagggactggtgcagctacagcctgctaaggtt
cctttcatagtgaacacactgtgggatgctctgctggagcttgatgacctcacagcttct
acaaacagcatcatgactttactatcatccctgctcacataccctcaggtccttcactgc
agcatgcagcagtcactgaccattttggttcctcgggtgtggccatttcttagacacacc
atcgcttctgtacgacgtgctgccttagagacccttttcactctgctgtccatggctgat
cagagctgtgccatgtggctgaaccctatcctacaagacatgctgaggcacatatttcaa
tcctgcattctcgagagcaaccaagagatactcgatctcatccagaaggtgtggggtgaa
ctgttacggcaggcccctcagcagtatgtcgtagcagccagctgtccatggatgggtgcc
tggctctgtttgatgatgcaagcacctcacattcccattgacatcaacatgctattggag
gtcaaggctcgatccaaggagaaggcgagtgggaagtctcggcagggtggaccgcaggtg
aaggagactgtgcaagagtacatcgggggagcggacaccatcactgaggacccagtctcg
agagactatgtagtgactcgtgcccggctcatggctgccaaactgctgggagcactgtgc
agctgtatctgcgacccacggttaaacagctcgactcaagagattcggccagcggagtca
ttggcccagcttctcctattccacctcaactctaagtcagccctgcagcgcgttgctgta
tccatggtgctgtgtgagtgggcatccttacagaaggaatgtgaggtagtgtccagtgtg
gtccagcctcgtctgttggccatcctgtctgagcatttgtattatgatgaaatcgccatc
cccttcacacgcatgcagaacgaatgcaagcagctcatcgcactccttgctgacgctcat
atcgacgtgagggagaaaatcaactgtagtgtcttcaccatcgatcaggccaacgagctg
gtgactagcatcttctctgaggccacagcgtctttgaacctgaagtctcggcagctgcag
tcattggacagtaagcggcagcaggcgtgctctacggtggctgagaccagtgctgagtgg
cagcagatgcatctacgcgtgcatacttttgcggcctgtgccatggtaggcctggcagca
ctgccggacaagctcaacccactggtgcggccccttatggaggctgttaagaaggaggag
aacaccctggtacagggatatgctgcctccagcatagcccgcctgctccagctctgcaca
gagcgcacaccctgccccaattcaaagatcattaaaaacctgtgcagctcggtgtgtgtg
gaccccatgctcacacccaatgcagagtgccctgttcctccacacacacctccaacacag
gatggctgcaaagccaccgtgtctgagaaagatggcatgcaccacatggtgaataaaaca
aaaggtatcatcactctttaccgacatcagagagcagcttttgccatcaccagcaagaga
ggccctgctcccaaaccgccaaaaacctcacccaatgaccctcccccaggcagctccatc
tccacagaaactgatgagagtaagaagccgatcctcatccagaggagaggtgcagagttc
tcactgatgactgttgcaagacactttggccctggcctcaccaaggatttgccctgtctc
tgggagtctatgattggcccactgaaggctctagtggacatgctgggttgtaattccagg
cagctcttggagaagggtgatttggtagctcaggaactggtcaactctctccaggtgttg
gaggtcaccacaggagccatggctcaggagctcatatctctgctgttggagcagctacct
ctgctgtgtgcatgtctccagcacccgtacacagctgtgcgtcacatggctgctcgctgt
gttggcgtgttcagtaagatcgccactatggaaaccatgagctgcttcctggagcacgtg
ctgccatggttcggggcgattgacgaccggaccaaacaggagggagcaattgaggcaatg
gcttgtgtgatggagcagctggacgtggacattgtaccctacatcgtgctgttggtggtg
cctgtgctgggccgcatgagcgatcctagtgacagtgtgcgcttcatggccacacagtgt
ttcgccactctcatacgtctgctccctctggaggctggcatacccaacccacccacgatg
tcggatgacctcattcgtcagaaggccagagagcgtcactttctggaacagctattggat
agcagaaagctagagaattacacaatccctgtccctattaaggcagaactcaggaaatat
cagcaggatggagtgaactggttgtctttcttgaataagtacaagctgcatggaatcctg
tgtgatgacatgggtttggggaaaacccttcaatccatctgcattctggctggagaccac
tacctcagggcacaggagtatgccaggaccaaggctatagactgttgtcctctgccctct
atagttgtgtgcccccctactctgacaggccactgggtagacgaggtaggcaagttctgc
actaaggagtacctgaaccctctgcactatacaggtccccctacagagagagcacgatta
cagcaccaagtgaaaaagcacaaccttgtggtagcatcatacgatgtagtgcggaacgac
atcgacttttttaggaatataaaatttaattactgcatcctcgatgaaggtcacgttatt
aaaaatggcaagaccaaattatccaaagctatcaagcagctgtctgccaactacagaatt
atcctctcaggaactcccattcagaataatgtcctggagctgtggtctctctttgacttc
ctgatgccaggctttctgggtacggagcgccagtttgccgcccgttatgggaagcccatc
cttgctagcagagacgccaagagttcgtctcgggaacaggaagcaggggttttggctatg
gaggctctgcatcggcaagtgctaccctttctcctgaggaggatgaaggaggatgtcctc
caagatcttccacccaagattatacaagactactactgtaacctgagtcccctacaggtt
cagttgtatgaggactttgccaagtctcgtgctaaggtgaatgtggatgatgccttctcc
acagcagctcaagaggatgaggacaaacccaaactgaaggccacaggacatgtgttccag
gcacttcagtacctcaggaagctgtgtaaccatccagcgctggtcctgacacctcagcat
cctgagcacaagcgcattagcgagcagctcacctcccagaattctagcctccgggacatc
cagcatgcaccaaaactttctgcccttaaacagttgctgctggactgtggtctgggttca
tccggctcctcggatgtcagtacagaggctgtggtggctcagcaccgtgtgctgatcttc
tgccagctgaagagcatgctggacatggtggagcatgatctgctgaagcctcagctgcca
acggttacctatctgcgtctggacggcagtgtacccgcaggcctgcgccattccatcgtc
tccaggttcaacaacgacccttcgatagacgtgctgcttctaacaacacacgtgggtggt
ctgggcttgaacctcacaggagctgataccgtggtgtttgtggaacatgactggaaccca
atgagagacctacaggctatggaccgtgctcaccgaataggacagaaacgtgtggtgaac
gtgtatcgtctgatcactcgtggcactttggaggagaagatcatgggtctgcagaagttt
aagatgagcatagcgaacactgtgatcagccaggagaactccagcctccagagcatgggc
acagatcagctgttgaaccttttcaccctggacaaggacggtaaagtcgagaagagcgac
gcggcatcctcgtcctcagggaagaccagtatgaagtctgtactggacggcctgggggag
ttgtgggaccagcagcagtatgaagcagagtatgacctggataatttcatgctgtcactg
cactaa
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