Ictalurus punctatus (channel catfish): 108263671
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Entry
108263671 CDS
T04658
Symbol
trim8a
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM8a
KO
K12001
tripartite motif-containing protein 8 [EC:
2.3.2.27
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108263671 (trim8a)
Enzymes [BR:
ipu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108263671 (trim8a)
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
108263671 (trim8a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
TRIM_CC
zf-C3HC4_2
zf-RING_2
zf-RING_5
DUF3287
DUF3375
DIT1_PvcA
FliD_C
Motif
Other DBs
NCBI-GeneID:
108263671
NCBI-ProteinID:
XP_017320197
Ensembl:
ENSIPUG00000008307
UniProt:
A0A2D0QP70
LinkDB
All DBs
Position
3:14216448..14230741
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AA seq
569 aa
AA seq
DB search
MSSAQAAEMAEAWKNCFEEELICPICLHVFVDPVQLPCKHNFCHSCISEAWAKDVGILRC
PECNQPYKQKPSLDKNIKLINIVEKFNALNTEKEPAVLQCILCRRGPALPALKVCLRCNA
PCCQSHIQTHLQQPSSNAGHLLVDVEDVRAWSCPQHDEYRLYHCETEQVAVCRYCCFSRC
AVGHGHGVCDVELRQNDIRHMLMKQQDRIDDRVQDIEELLYKLESDKRQVEDKVDQLKQE
VRLQYQKMQQLLEEDLGKALNVLEKSRSKFCQENSRQVLQLNERRQEAKKMLSSVQLLFD
KAENINFMKNTKPVKVILDRSQTSIDSALPPYNAGHLNSKVFLAEISKKEKNLRKMLEAP
FAAPAHFFQSVPVYQCRVSSSGSEKRKHSTAFPESSANFMESSSGPVNKQQFLAPSTSAD
EGPSVASCSTARHIVSLNSGGTEVSDAQPLHHSSSVFSPAHYPNAGSTQQAMLPQYNGRK
ILMCTVDNCYCSSMPSVSGHHGHPSYPRSPSFAWAQEFSHPMPPPAPSMSQPMQNISVRG
NWIGTSQSHRHPDFYSLYGEPSTKHYVTS
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgcccaagcagctgagatggccgaggcctggaagaactgtttcgaggaggaa
ctcatctgccccatatgtctgcatgtgttcgtggaccccgtacagctgccgtgtaagcac
aacttctgccacagctgcatcagcgaggcctgggccaaagacgtgggcattctgcggtgt
ccggagtgcaatcagccgtacaaacagaagcccagcctcgacaagaacatcaagctaatc
aatatcgtggagaagttcaacgccctgaacacggagaaagaaccggccgtactgcaatgc
atcctgtgcagacggggacccgcgcttcctgcgctgaaagtttgcctgcggtgcaacgcg
ccctgttgccaatcgcacattcaaacacaccttcagcaaccttcttcaaatgccgggcat
ctgctagtagatgttgaagacgtgcgggcctggagctgcccacagcatgatgaatacaga
ctgtatcactgcgagaccgagcaggtggccgtgtgtcgttactgctgcttctccagatgt
gcagtcggccatggacatggcgtctgcgacgtggaactgcgtcagaatgatataaggcac
atgttgatgaagcagcaggatcgtatcgatgaccgagtgcaggacatcgaagagctgttg
tacaagctggagtcagacaaacggcaggtggaggataaagtggatcagttgaaacaagag
gtgcgcctgcaatatcagaaaatgcaacagctcctggaagaggacctggggaaggctctg
aatgtgctggagaagtcacgatcgaagttctgccaggaaaactccagacaggtcctgcaa
ctcaatgagcggcgccaggaggccaagaagatgctcagctctgtccagctcttatttgac
aaggcagagaatatcaacttcatgaagaacacaaaacctgtaaaagtcatcctggataga
tctcagacatctatagacagtgcactacctccctacaatgcaggtcaccttaactctaaa
gtctttctcgctgagatttctaaaaaggagaagaacctacgcaaaatgctggaagcaccc
ttcgccgctcctgcgcactttttccagagtgttcctgtctaccaatgcagagtgagcagc
tcaggatcagaaaagcgcaagcactcgactgcatttcctgagagcagcgcaaacttcatg
gaatcctcgtcaggtcctgtgaacaagcagcagttcctggctccaagtaccagcgccgat
gaagggccatctgtggcctcctgcagcactgctcggcacattgtgagcctcaacagcggc
ggcacagaagtgagcgatgctcagcctctccatcattccagctcagtgttcagtcccgcc
cattaccctaacgctggctccacccagcaggcaatgctgccacaatacaatggccgtaag
atcctcatgtgtacagtggacaactgctactgctccagcatgccctctgtgtccggacat
catggccacccatcctatccacgctcaccctcttttgcctgggcgcaggagttctcgcac
ccaatgcccccccctgctccctccatgtcccagccaatgcagaacatctcagtgcgtggc
aattggattggcacctcacagagccacaggcaccccgacttctacagcctctatggagaa
ccttctactaaacactatgtcaccagttaa
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