Ictalurus punctatus (channel catfish): 108263684
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Entry
108263684 CDS
T04658
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108263684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108263684
03036 Chromosome and associated proteins [BR:
ipu03036
]
108263684
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
108263684
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
108263684
RSF complex
108263684
WICH complex
108263684
B-WICH complex
108263684
NORC complex
108263684
BRF complex
108263684
NuRF complex (fruit fly)
108263684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
108263684
NCBI-ProteinID:
XP_017320218
Ensembl:
ENSIPUG00000005229
UniProt:
W5UKN3
LinkDB
All DBs
Position
3:complement(31242602..31257366)
Genome browser
AA seq
1029 aa
AA seq
DB search
MSETEGSVDKQREEAEVEQPATTQDAALGAEEAGQDGGEPSSSPPAEKAKAEPVACYEEK
VKTDRTNRFEYLLKQTEVFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSAGDNRH
RRTEQEEDEELLSESSKAANVCTRFDESPSYVKTGKLRDYQVRGLNWLISLYENGINGIL
ADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFNRWVPSLRAVCLIGD
REERTAFIRDTLLPGEWDVCVTSYEMLIIERAVFKKFNWRYLVIDEAHRIKNEKSKLSEI
VREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNCLGDQKLVER
LHTVLRPFLLRRIKADVEKSLLPKKEVKMYVGLSKMQREWYTKILMKDIDILNSAGKMDK
MRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNSGKMAVLDKLLPKLKEQGSRVL
IFSQMTRMLDILEDYCMWRNYGYCRLDGQTPHEERQISINVFNEPNSPKFLFMLSTRAGG
LGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVRVFRFITENTVEERIVERAEM
KLRLDSIVIQQGRLVDPNMNKLGKDEMLSIIRHGATHVFASKESEITDEDIDVILERGEK
KTMEMKEKMSTLGEGSLRNFTMDTENSVYNFEGEDYREKKKVITNWIEPPKRERKANYAV
DAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNP
ELPNAAQVQKEEQAKIDEAEPLNEEELEEKENLLSQGFTIWNKRDFNQFIKANEKWGRDD
IENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDSK
IGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCIRNSPQFR
FDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPRNSSAQKRKQDGTPDG
RGRKKKLKL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagacggagggaagcgtggacaaacagcgggaagaggctgaagttgagcaaccc
gcgacaacacaggatgcggctttaggtgctgaagaagcggggcaggatggaggcgagccg
tcgtcctctcctccggctgaaaaggcgaaggcggagccggtggcgtgttatgaagagaaa
gtgaaaacagaccggaccaacagattcgagtacctgctgaagcagacggaggtgtttgct
cactttattcagcctgctgcgcagaagacccctacgtctccgctgaagatgaagcccggc
cgccctcggattaaaaaggacgagaaacagaacctcctgtctgctggggataaccgtcac
cgccgtaccgagcaggaggaggacgaggagctgctcagtgagagcagtaaggccgccaac
gtgtgcacgcgctttgacgagtctccatcctatgtgaaaacgggcaaactccgagattat
caggtccgtggactgaactggctgatctcactgtacgagaatggaatcaacggcatcctg
gctgacgagatgggtctcggaaagactctgcagaccatttctctcctcggctacatgaaa
cactacaggaacatccccgggcctcacatggttctggttcccaagtccacgctgtataac
tggatgaacgagtttaatcgctgggtcccctcgctccgagctgtctgcctcataggagac
cgggaagagaggaccgcgttcatccgtgacactctgttgccgggagagtgggacgtgtgt
gtcacttcctatgaaatgctcatcatcgaaagggctgtgtttaagaagtttaactggaga
tacctggtgatcgacgaggcccatcgtatcaagaacgagaaatcgaagctgtcagaaatt
gtgcgagagttcaagaccaccaaccggttgctgctcacagggaccccgcttcagaacaac
ctgcacgagctgtgggctctgctcaacttcctcctgcctgatgtcttcaactcgtccgag
gactttgattcctggtttgacacgaataactgtcttggagaccagaaactggttgagcgt
ttacacactgtattacgtccttttctactgaggcgtatcaaagctgacgtggagaaatct
ctgcttcctaagaaagaagtcaagatgtatgtcgggctcagcaagatgcagagagaatgg
tatactaaaatcctgatgaaggacatcgatatcctgaactcggcagggaagatggataag
atgcgtctgctgaatgtgttgatgcagctcaggaagtgctgcaatcacccgtacctgttt
gatggcgcggagcctggcccaccttacaccactgacctccatcttgtcgtcaacagcggc
aagatggccgtactcgataagctgctgcccaagctgaaggaacaaggttctcgtgtgttg
atcttcagccagatgaccaggatgctggacattctggaagactactgtatgtggcgtaac
tacggttactgccgcctggacggacaaacgcctcacgaggagagacagatctccatcaat
gtctttaacgagcccaacagtcccaagtttctctttatgctgagcactagggccggtggg
ctggggattaacctggctacagcggacgtggtcattatttatgactctgactggaatcct
caagtggacctgcaggccatggaccgcgctcacagaatcggacagaagaagcaagtacgc
gtgttccgtttcattacagagaacaccgtcgaggagaggatcgtggaacgtgccgaaatg
aaactacgtctggactccatcgtcatccagcaaggtagattggtcgatcctaacatgaac
aagctgggcaaagatgagatgctgtctatcattcggcacggcgccactcacgtcttcgct
tccaaggagagcgaaattacagacgaagacatcgatgtcatcctggagagaggcgaaaag
aagaccatggagatgaaggagaagatgtccacgcttggtgaaggctctctgcggaatttc
accatggacactgaaaacagcgtgtacaacttcgaaggcgaggattaccgagagaagaaa
aaggtcatcaccaactggatcgaaccaccaaaaagagagcgtaaagccaactacgctgtc
gatgcttacttcagagaggccctgcgtgttagtgagcctaaagcgccaaaggctcctcgg
cctcccaaacagcccaacgttcaagacttccagttcttccctcctcggcttttcgagctg
ctcgagaaagagatcttgtactacaggaaaactattggctacaaggtgccgaggaatcct
gagctgcccaatgctgctcaggtgcagaaggaggagcaggcaaagatcgatgaagcagaa
cctctgaatgaagaagagctggaggagaaggagaacctcctgtcgcagggcttcaccatt
tggaacaagcgagatttcaatcagttcataaaggctaatgagaaatggggaagagacgat
attgagaacatcgcccgtgaagtggaaggcaaaacacctgaagaagtcatggaatattct
gctgtgttttgggagcgctgtaatgagctgcaggatattgagaagatcatggctcagatt
gagagaggtgaagccaggattcagaggaggatcagcatcaagaaagcactggactcaaag
atcggacgttacaaggcaccgttccaccagctgaggatttcttacgggaccaacaagggg
aagaactacaccgaggaggaagaccgattcctcatctgcatgctgcacaagctgggtttc
gacaaggagagcgtttacgacgagctgcgccagtgtattcgcaactcgcctcagttccgc
ttcgactggttcctgaagtctcgcacggctatggagctacagaggagatgtaacacactg
atcactctgatcgagcgcgagaacatggagctggaagaacgagagaaggcggagaagaag
aaacgaggacctcgcaattcttcagcacagaaacgtaagcaggacgggaccccagacggc
cgcggtcgtaaaaagaagctgaagttgtaa
DBGET
integrated database retrieval system
