Ictalurus punctatus (channel catfish): 108263723
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Entry
108263723 CDS
T04658
Symbol
ldb3a
Name
(RefSeq) LIM domain-binding protein 3a isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108263723 (ldb3a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
108263723 (ldb3a)
Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
108263723 (ldb3a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LIM
DUF4749
PDZ
PDZ_6
LIM_FHL2-3_N
PDZ_2
Motif
Other DBs
NCBI-GeneID:
108263723
NCBI-ProteinID:
XP_047009988
Ensembl:
ENSIPUG00000016414
UniProt:
A0A979E6K3
LinkDB
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Position
3:26331731..26394773
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AA seq
820 aa
AA seq
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MSTYTVTLAGPAPWGFRLQGGKDFNMPLTISRITPGSKAASGNLSQGDIIVAIDGVSTEG
MTHLEAQNKIKSANYNLALTMAKSKRPVPLSMTAPRIDTSIPVIPHQKVVTNMPINNEYV
PSFNPIALKDTALSTNKPIEVKGPGGKATIIHAQYNTPISMYSQDAIMDAIAGQSQARGA
EMSGDEALSGSPLSSLPVKERVVDSASPVYQAVNASGEVLEPAEWARRAAHMQSKSFRLL
AHVTGTEYLQDPDEEALTRASTPVQHAAVSMNTAAVALSASAALPSQLAAELQIANQAPE
QSAEPASVGSSHVSFLSPPEPQAVSQADPVAHEANEVPVLPPEGPRHLSLAASTISTALT
AQSRNHVYKKGPPPTSALEALPITPYFCSRALPKRKQSGKAKKVSFTMQSSSSYRSQYQT
SGISNQYAHQPHMQQAPPTQQPLHIQTAPPTQQAPPMQQSSIHIPVGPSPNKLVSTTTIV
PTAYPTAPACEWQGEKAQRGVHFSEALVQAPVHAPAPVPPLAPVHFPAPAPVHVPLPAPV
HFPASTPPAPAPGPAQSSNRPPWVMDDTFAQKFDPSKTTTTSIKVQPLPTAAPPAPAYIP
NPSPAPAAPSPAPAPFVPASFPPVARGVAQRAERFAASNRTPMCGSCNNIIRGPFLVALG
RSWHPEEFNCHYCHTSLADVSFVEEQNNVYCENCYREFFAPTCARCSTKIMGEVMHALRQ
TWHTTCFVCAACGKPFGNSLFHMEDGEPYCEKDYIALFSTKCHGCDFPVEAGDKFIEALG
HTWHDTCFVCTVCHINLEGQPFYSKKDKPLCKKHAHAINV
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgagcacttatactgtgacacttgctggacccgcgccatggggcttccgcttgcaagga
ggcaaggacttcaacatgcctctcaccatttcccggatcactcctgggagcaaagcagct
tcaggtaacctgtcccagggtgacatcatcgtagccatcgatggtgtcagcactgagggc
atgactcacctggaggctcagaacaagatcaagagtgccaactacaacctggccctcacc
atggcgaagtcaaagcgcccagtccctttgtccatgactgcaccaagaattgacacttca
attcctgtcatccctcaccagaaggttgttaccaacatgcctatcaacaacgagtatgtg
cccagtttcaaccccattgccctgaaggacacggctctttccaccaacaagcccattgaa
gtgaaggggccgggaggcaaggccaccatcatccacgcccagtacaacactccgattagc
atgtactcgcaggatgccatcatggacgcaatcgctggtcagtctcaggccagaggggct
gaaatgtccggcgatgaggctctctctggctctcccctttctagtctgcctgttaaagag
cgtgttgtagacagtgcttccccagtgtatcaggctgtgaatgccagcggagaagtgctg
gagcctgctgagtgggcacggagagccgcccacatgcaatccaagtccttccgcctcctt
gcccatgtcaccggcactgaatacttgcaagacccagacgaggaagctcttacaagagcg
agtacgcctgtccagcatgctgcggtctccatgaacacggccgctgtcgcattgtccgct
tctgcagctttgcccagtcagctcgccgctgagctgcagatagccaatcaggcgcctgag
cagtctgctgaaccagcctctgtaggctctagccatgtcagctttttgtcaccccctgag
ccacaggctgtatctcaagctgaccctgtggctcacgaggctaatgaggtccctgttctc
ccccctgaggggccacgccacctgtcgcttgctgcctcaaccatttcaactgctttgact
gctcaatctagaaaccatgtgtataagaaagggccgccgcccacctctgcgctggaggcc
ctgccaatcacaccatacttctgcagcagagctttgcccaaacgcaagcaatcaggaaaa
gcaaagaaagtgagcttcaccatgcagtcctcttccagttacagatcacagtaccaaacc
tccggcatcagcaaccagtatgcacatcaaccacatatgcagcaagctccacctactcaa
cagcctcttcacattcaaactgctccacccactcaacaggccccgcccatgcagcagagc
tccatccatatccctgtaggtccgtctccaaataaattggtcagcactaccaccattgtg
cctacagcttatcccactgctccagcgtgtgagtggcagggtgaaaaggcacagcgtggc
gtccatttcagtgaagcccttgttcaagcccccgttcatgctcctgctccagtccctcct
cttgccccagttcattttcctgctcccgccccagttcatgttcctcttccagccccagtt
cattttcctgcttccactcctcctgctcctgcccctggccctgcccaatcctccaacaga
cccccatgggttatggatgacacttttgcccagaagtttgaccccagcaagaccaccacc
accagcatcaaagtgcagcctcttcccactgcggccccaccggctcctgcctacatcccc
aacccttctcctgctcctgctgcccccagccctgccccagccccctttgtccctgcctct
ttcccacctgtggctcgtggagtagcacagagagcagagcgctttgctgccagcaatagg
acaccaatgtgtggatcctgcaacaacatcatcagggggccattcctagtggcactgggc
cgctcgtggcacccggaggagtttaactgccattactgccacacatctctggctgacgtc
agctttgtggaggagcagaacaatgtttactgtgagaactgttacagagagttcttcgcc
cctacctgtgcccgctgcagcactaagatcatgggagaagtgatgcatgctctgcggcag
acctggcacactacctgctttgtgtgtgctgcatgtgggaaaccgtttggaaacagcctc
tttcatatggaggatggagaaccttactgtgagaaagattacattgcgctcttcagtact
aagtgccatggctgtgatttcccagtggaggctggggataagtttattgaggctcttggc
cacacatggcatgacacctgctttgtgtgtacggtttgccatataaatctggaaggccag
ccgttctattctaagaaggacaagcctttatgcaagaaacacgctcacgccatcaacgtg
tag
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