Ictalurus punctatus (channel catfish): 108263746
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Entry
108263746 CDS
T04658
Name
(RefSeq) PDZ and LIM domain protein 1
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108263746
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
108263746
Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
108263746
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4749
PDZ
LIM
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
108263746
NCBI-ProteinID:
XP_017320335
Ensembl:
ENSIPUG00000021620
UniProt:
W5U9L0
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All DBs
Position
3:22317915..22325075
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AA seq
322 aa
AA seq
DB search
MPQRIVMQGPGPWGFRLVGGKDFEQPLTISRVTPGSKAAQASLCIGDIIIAIDGEPTEGM
THLEAQNKIKGCVEEMVLSIDRSELKTWSPLVSEDGKTHPYKMSLASESQEVKHIGSAHN
RSALPFNSPAGSKVVTSQYNNPAVLYSSDNIKNFNSAVGGAKTIMTSSEPSNNPDLSKPV
QPKPSIAVDSEVYKMLNENQESCEPPRQSASFKVLQEILETGDSDKPSGFRSVKAPTTKI
ASSLGSTEKLSICDKCGSAIVGMFVKLRDKYRHPECYVCTDCGTNLKQKGHFFVEDKIYC
EKHARERVTPPEGYDVVTVFPK
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgccccagcggattgtcatgcagggtcctggaccttggggatttagactggtcggtggt
aaagatttcgaacagcctctgactatttcacgggtaaccccaggaagtaaagcagcccag
gccagcctctgtattggcgacattattattgccattgatggtgagccgacggagggaatg
actcacttggaagcccagaataagatcaagggttgtgtcgaagaaatggtcctctctata
gacagatcagaattgaaaacgtggtctccccttgtctctgaagatgggaagacacatcca
tacaagatgagtctggcctcagaatcacaggaagtgaaacacataggttctgctcacaac
aggagtgctcttccgttcaattcgccagctggttccaaggtggttacaagccagtataat
aatccagctgtcttgtactcttctgataacatcaagaactttaacagtgctgttggtggt
gccaagaccattatgacatccagcgaaccaagtaataatccagatctctccaaaccagtc
cagccaaaaccatcaattgctgttgactccgaagtctataaaatgctgaatgagaaccaa
gagtcatgtgagcctccacgtcagtctgcatcattcaaagtcctgcaggaaatccttgag
actggtgattctgacaagccatctgggtttagaagtgtgaaagcacccactacaaaaatt
gcttcttctctaggcagtactgagaaactctccatctgtgacaaatgtggctcagcgatt
gtgggcatgtttgtcaaactgcgagataagtaccgccaccctgagtgctatgtctgcact
gactgcggaacaaacctgaaacaaaaaggacactttttcgtcgaggacaagatttactgt
gaaaagcatgcacgtgaacgagtgacccctcctgagggttatgatgtcgtcactgtcttc
ccaaaatag
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