Ictalurus punctatus (channel catfish): 108264006
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Entry
108264006 CDS
T04658
Name
(RefSeq) probable ATP-dependent RNA helicase DHX34
KO
K20101
ATP-dependent RNA helicase DHX34 [EC:
5.6.2.6
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108264006
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108264006
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
108264006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
zf-C2H2_DHX34
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
XAF1_C
Motif
Other DBs
NCBI-GeneID:
108264006
NCBI-ProteinID:
XP_017320777
Ensembl:
ENSIPUG00000000655
UniProt:
W5UQX1
LinkDB
All DBs
Position
4:complement(21438171..21481168)
Genome browser
AA seq
1134 aa
AA seq
DB search
MSESIRGWDWNSPECRARMDEIFFRQHDYIQAKSIEHTEFWAFFERFQRFKAKKETEDLK
PSKSMEELHKTRERDTVDLGLPKEYDARYRINVFVSISDMEDRLGGFHGRRQRNYPTDPS
SQEVTNCRLALLHFLDFTQKQSFCKLVKLQHEQKSLPIFHYRDRFVELVQTHPVVVVAGD
TGCGKSTQVPQYLLASGFKHIACTQPRRIACISLAKRVSFESLNQYGSKVGYQIRFESRR
TSSTKLLFLTEGLLLKQIQHDAVLSQYHVVIVDEVHERHLQCDFLLGVLHSLLQRRPDLR
LVLMSATINIKLFSSYFTNAPVLQVPGRLFPIQVIYQPIPQKEQVSQLEKLDPRPYLRVL
QGIDQRYPPEERGDLLLFLSGVAEISTIMEACQTYAARTSRWIILPLHSTLSLAQQNKVF
DIAPPGLRKCIIATNIAETSVTIDGVRFVVDSGKVKEMTFDPKAKMQRLQEFWISRASSE
QRKGRAGRTGPGVCYRLYAESDYEAFAPYPVPEIHRVALDLLVLQMMSMGLGDPCSFNFI
DPPAAFSIQTSVRYLKEQGALDAQGELTPIGTLLAKLPVDVVIGKMLVLGSLFSLVEPVL
TVAAALSVQSPFLRSTQHNPDCATARQPLQSDLGDPFTLLSTFNAWVQIKGNREGGSRKW
CKRRGLEEQRLYEMANLRRQFKKLLRSHGLVTPESCNVAEDQAQRRKRLTEHQRLHQMKR
EHELKENSRRKVLHLEEVLGKGLSSDSDEEVAGSSKKDKDSAAQDIDIQEVKFKLQHDVS
KLQGDACASATLSSQQQALFRLVLCRGLYPQLALPDEHNSARKDSEQVFHTRNKQGVVIH
PTSVFASNLDLLHITESSAEKGQSNGHQLLAFVTLLETNKPYVSNCVRVPALQILLLVAN
SIDSNADCTRLVVDGWLELVISDSVAALKVLSSALIMRDKWDNLLQAKLSQSGLRSTAVL
GLAGPIPSHHDLKKVTDGLVRFLLYTEVSYSLRRLTPLQSQNLYIGPQLNMEVSLPPLFP
ETKAEPDSIKGGLRVTSYFTYNCLCDSKDLYSECLRTFWTCPHCDLHMPFTALEQMQHEA
TCRPLEEQQTEEEPDTVISGSLSNLTRLYHCNICNKDLTLTSTEILKHKRQHQS
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagagcatccggggctgggactggaatagtccagagtgtcgtgccaggatggat
gagatcttttttcgccagcacgactacattcaggcgaaaagtattgaacatacggagttt
tgggctttctttgagcgctttcagcggtttaaagccaaaaaggagaccgaggacttaaaa
cccagtaaaagtatggaagagttacataagacgcgtgaaagggacacagtggatcttggg
ctcccaaaagaatacgatgcccgatacaggatcaacgtctttgtaagcatcagcgacatg
gaggatcgtctcggaggcttccatggcaggcgacagaggaattacccgaccgacccaagc
agccaggaggtcacaaactgtcgtcttgctctgcttcattttctagacttcactcagaag
cagagcttctgtaaacttgtcaagctgcaacatgagcagaagagcctgcccatcttccac
taccgtgaccggtttgtggagctggtccaaacccacccggtggtggtggtggctggagac
accggttgtgggaagtccacacaggtgccccagtacctgctggcatctggctttaaacat
atagcctgtactcagcctcgccgcattgcctgcatttcccttgctaagagagtgagcttt
gagagtctcaaccaatatggttcaaaggttggctaccagatccgctttgagagcaggcgc
acatcaagcactaaactcctgttcctgactgagggtctgctcctcaagcagatacaacat
gatgctgtattatctcagtaccatgtggtgatcgtggatgaggttcacgaaagacacttg
cagtgtgacttcctgttgggtgtgctgcattccttacttcaacgtcggccagacctgcgc
ttagttcttatgtccgccaccatcaacatcaaactcttctccagctacttcaccaatgca
cctgtgctgcaggtgccaggtagactcttccccattcaggtgatatatcagcccatccct
caaaaggaacaggtgtcccaactggagaagctggacccaagaccatacctgcgtgtgctt
cagggcattgaccagcgctatccccctgaggagaggggcgatctgctgctttttcttagt
ggtgtagctgaaatctccactatcatggaggcatgccaaacctacgctgcacgcaccagt
cgctggatcatactgcccctgcacagcaccttgtcactagcacagcagaataaggttttt
gacattgctcccccagggttgaggaaatgcatcattgctacaaacatagctgaaacatca
gtgaccattgatggggtgcgctttgtagttgactcaggcaaagtaaaggaaatgactttt
gacccaaaggccaagatgcagaggcttcaggagttctggattagccgtgcaagttctgag
cagaggaaaggtcgggcaggtcgaacagggccaggagtttgctaccggctctatgctgag
tcagactatgaggcctttgccccttaccctgtccctgagatccatcgagtggctctagac
ttgttagtgctacagatgatgagtatgggtctgggagatccttgttcttttaacttcata
gaccctcctgcagcctttagcattcagacatctgtgaggtatctaaaggaacaaggggca
ctagatgctcagggagaactcacccccattggcactctgctggccaagctgccagtagat
gtggttattgggaaaatgctagttctaggttcactattcagcctggttgagccagtgttg
actgtagctgcagcactgagtgttcaatcaccatttctgcgcagtactcagcacaaccca
gattgcgctactgcacgccaacccttgcaaagtgacctgggagaccccttcaccctgctc
agcaccttcaatgcatgggtacagataaaagggaatagggaaggaggctccaggaagtgg
tgcaaaagaagaggactggaggaacagagactgtatgagatggccaacctgagacgacag
ttcaagaaactgttgaggagtcatgggctggtgacaccggagtcgtgcaatgtggctgag
gaccaggcccagcgcagaaagaggctgactgaacatcagagactgcaccaaatgaagagg
gaacatgagttaaaggagaacagccgcaggaaagtgttgcatctggaggaagtcctaggg
aaagggttgtcgtctgactcagatgaggaggtagcaggatcaagcaagaaggacaaagac
tctgcagcacaggacatagacatacaggaagtgaagttcaaactgcaacatgatgttagc
aagcttcagggagatgcatgtgccagtgcaacgctgtcgtctcagcaacaggctcttttc
agactggtgctgtgccgtggactttacccgcagctggccctgcctgatgaacataactct
gcccgcaaagattcagagcaggtgtttcacactcgtaacaagcaaggtgttgtgattcac
cccaccagtgtttttgccagtaatttggatttgctgcacatcactgagtccagtgctgag
aaggggcagagtaatgggcatcagttgctggcttttgtaactctgcttgaaactaacaaa
ccctatgtgtcaaactgtgtacgggtccctgccctgcagattttgctgctggtggcaaac
tccatagacagcaatgcagactgcacacggctggtggtggatggctggctggagctggtt
ataagtgatagtgtggcagctctcaaagtgctgtcctctgctctcattatgagagacaag
tgggacaatctgctacaggccaagttgagccagtcaggtttgagatcaactgcggttcta
gggcttgctggcccaataccatcccatcatgacttaaagaaagtcactgacggacttgta
cgctttctgctgtacacagaggtgagctacagcctgagaaggcttaccccgctgcagtct
cagaacctgtacatcggacctcagctgaacatggaggtttctctccctccactcttccct
gagacaaaagctgaacctgattcaattaaaggaggcctacgtgtcaccagctacttcacc
tataattgcctctgtgactccaaagacttgtacagtgagtgtttgcggacattttggacg
tgccctcactgtgacttgcacatgcccttcactgcactggagcaaatgcagcatgaggcc
acctgtaggccactagaggaacagcagactgaggaggagcctgacacagtaatatctgga
tcactgtctaatctgactagactctaccattgtaatatctgtaataaagacctaacccta
acctccaccgagatacttaaacacaagcgtcaacaccagtcctga
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