Ictalurus punctatus (channel catfish): 108264228
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Entry
108264228 CDS
T04658
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108264228 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108264228 (cnot3a)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108264228 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108264228 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
108264228
NCBI-ProteinID:
XP_017321053
Ensembl:
ENSIPUG00000000167
UniProt:
A0A2D0QRG6
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All DBs
Position
1:2881903..2893194
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AA seq
860 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKSWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEETEQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEELKKLIERHRYHI
RMLETILRMLDNDSVQVEAIHKIKDDVDYYIDSSQDPDFKENEFLYDDLDLEDIPMLATS
PQGHNDDEMSTPTSTTSSSPVPPSPATATAEIPEEEKKRGRSTDGEVSQSPVKSSNPLSS
FSSSSSSSSGFSSSSTSSLVSMAAVVGGTASVSGGNTLLGSFSSAVQQHPHSKLSSSSSS
SSSSSSSSSSSSSVTSSSTSSPPSHPNLPSSTTPSALPSSNSQPLTSGVLNVGKAGTAVT
SSSMPGNMAAAATVISSSMPTPYAQAAAGSGPGGPTGNNSGTVSAVGGASANTNSTPNAN
GTLPMSSNGGVLGLVPAQPTHQGAVQLPISPSVGTVPGGGASMGAGNGGSTVSSGGIMGN
VAPARPPSVVKQNGGTNPLAYSAVVADSSSDSSLSSASLSQSSQPSSTGSLANQTLDNGP
TLLSSITLPPSSQSPSFSDSAPGGGSLLNGPHSYTPGPDPIKAPEPLSSLKAMAERAALG
TGLDGEIPPLHLTERDLFSGSSSAPGPPVPPQPAVTEVNLPPTLGACPLGPSPLSKEQLY
QQIMQEAAWGHMPLPSDSERIRQYVMRTPCPLLPFHHHTPPHHCDSIDFYQRLSTETLFF
IFYYLEGTKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWG
QRKKEGFTFEYRYLEDRDLQ
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggccgataagagaaaactccaaggtgaaatagaccggtgtttgaaaaaagtggcagag
ggggtggaacagtttgaggacatttggcaaaagctccacaacgcagccaacgccaaccag
aaggagaaatacgaagctgacctcaagaaggagattaaaaagctccagagactccgagac
cagattaagtcatgggtggcgtccaacgagataaaagacaaacggcagctagtggagaac
cggaagctcatcgagacgcaaatggagcgctttaaagtggtagagcgggagaccaagacc
aaggcgtactctaaagaaggactaggtttggctcagaaggtggatccagcgcagaaggag
aaggaggaaacggagcagtggctcacgaacaccatcgacacactgaacatgcaggtggac
cagttcgagagcgaggtggagtctctatccgttcagaccaggaagaaaaaaggagacaag
gataagcaggatcgtatcgaggagctgaagaagctgattgagagacaccggtaccacatc
cgcatgctggagaccatcttaaggatgttagacaacgactcggtgcaggtggaggcgatc
cacaagataaaggacgacgtggactactacatcgactcctcgcaggatcccgactttaag
gagaacgagtttctgtacgacgacctcgacctcgaagacatcccgatgttggcgacatct
ccgcagggacacaacgatgatgagatgagcactccgacctccacgacgtcgtcctctcct
gtaccgccgtctccggccacggctaccgcggagatccctgaagaggagaagaagagaggc
cgatctactgacggcgaagtgagccagtcacctgtgaagagcagcaaccccctgtcgtct
ttctcctcctcttcctcctcctcctcaggtttttcgtcttcttccacctcctccctcgtt
tccatggcagctgttgttgggggaacggcgtcggtttctgggggcaacactctcctgggc
agtttcagcagcgccgtccagcagcatccacacagcaagctgtcctcatcttcgtcgtcg
tcgtcatcttcctcctcctcttcctcctcctcctcctcagtgacgtccagcagcacgtcc
agcccgcccagccaccctaacttgccctcgtccaccaccccgtcagctcttccctcttct
aactctcagccgctgacgtcaggagttcttaacgtgggcaaagcgggcacggctgtgacc
agcagcagtatgccgggcaacatggctgccgccgccaccgtgatttcgagctcgatgccc
actccttatgcccaggcggcagccggaagcggcccgggtggacccacaggaaataacagc
ggcaccgtttcagcggtgggcggagcaagcgctaacactaattccacgccgaacgctaac
gggacgcttccgatgagctccaatgggggtgttttaggcctcgtaccagcgcagccgacg
caccagggagcagtgcagttacccatcagcccatcggtaggcacggtgccagggggtgga
gccagcatgggcgctggaaacgggggcagtacagtgtcatcagggggcatcatgggtaac
gtggcacctgcccgaccgcccagtgtggtgaaacaaaatggaggaacaaaccctctagcg
tacagcgcggtggtggccgacagcagctcggactcctccctcagcagtgccagcctatca
cagagcagccagccctcttccaccggctccttggccaatcaaactctggataacgggccg
accctgctgagctccatcactctgcctccctcctctcaatctccgtcgttttcagacagc
gcccccggtggtgggagtttgttgaacggcccgcactcctacacacccggcccagacccc
ataaaggctcctgagcctctgagctctctgaaggcaatggctgagcgagcagctctaggt
actggactggatggagaaatcccaccacttcatctgacagaacgagatttgttttcggga
tcctcctccgcccctggcccaccggttcccccccagcctgctgtgacagaggtgaatctt
cctcctactctgggggcgtgtcctctaggcccctcccctctcagtaaagagcagctgtat
cagcagatcatgcaggaggcagcctgggggcacatgcccctcccgtcagactcggaaagg
atcaggcaatacgtgatgaggactccgtgccctcttttacctttccaccatcacactcct
cctcatcactgcgactccattgacttctaccagagactctccaccgagaccctgtttttc
atcttctactacctggagggcacgaaggctcagtatctctcagcgaaagccctgaagaag
cagtcttggagattccacactaaatacatgatgtggttccagagacacgaggaacccaag
accatcaccgatgagttcgaacagggaacttacatttactttgactatgaaaaatggggc
cagagaaagaaggagggcttcacgttcgagtacagatacctggaggaccgagacctgcag
tga
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