Ictalurus punctatus (channel catfish): 108264296
Help
Entry
108264296 CDS
T04658
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108264296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108264296
Enzymes [BR:
ipu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
108264296
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
HECT type E3
108264296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
Motif
Other DBs
NCBI-GeneID:
108264296
NCBI-ProteinID:
XP_017321179
Ensembl:
ENSIPUG00000001343
UniProt:
W5UBF2
LinkDB
All DBs
Position
4:22434952..22505939
Genome browser
AA seq
2072 aa
AA seq
DB search
MSIRINHTAGGSLRRSQRNTLATRLQSEQTKQKTNSPPESKRSYTKASKAPPTPAAGSSR
GHAPRRNSLSLSSLSHSAPDPDSEAAGSSGQHEQREVVNNRALKRSSAPDHNNTSYSPSP
AKRPKAPPLESSEQLEPADPTADSAPELPSTARSKKRRLASEHPTSRTLNRKSGTCPATS
ASHKRKKADTPFCSSSSSSFSSSSSFLSGSSSEQASRSSKPSKLASKSAASAKSVTDSAS
SSSASSSSFTSSSSSSSSVVVAGASGCAPPSQGARLKQGKDQSKSRRSRSASSPSPRRSS
RDKEHSKSSTAASKFDWTSRFSPRVNLPKPRLALPGSSKPETPSGSSKPGPSGLQAKLAS
LRKSNKKRSESPPAELPSFRRSTRQKTTGSCASTSRRGSGLGKRGAAETRRQDKMAENDN
NQDGANSSRTEETPQGASASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFG
PRMSQLFHRTIGTGASSKAQQLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVK
SVVPALITLLQMEHNFDIMNHASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVA
EQALTALEMLSRRHSKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHF
VADSLPLLTQRLTHQDKKSVESTCLCFARLVDNFQHEENLLQQVASRDLLTNIQQLLVVT
PPVLSSGMFIMVVRMFSLMCSNCPNLAVQLMKQNIAETLRFLLCGASNGSCQEQIDLVPR
SPQELYELTSLICELMPCLPREGIFAVDAMLKKGSAHTTEAAVWQWRDDRGLWHPYNRID
SRIIETAHQNGEDEISLSTLGRVYTIDFNSMQQINEDTGTARGIQRKPNPLINPNTGHVE
VRGEDARAELMREEAELARCFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFSDSEL
LKDVLRNHAVSSHIASMLSSQDLKIVVGSLQMADILMQKLPDVFSVYFRREGVMHQVKNL
AESESFLPSPPKACTSGITAATTTITTATTPAASSVTPDLGSPSFHNNMEDSLDLSPQGR
LSDVLKRKRLPRRVPRRPKYSPPRDDEKVDNQAKSPTTTASPKSSFLASLNPKTWGKLGA
QNNSTNSEPSRTAGVSGLARTANKDTVSNNRDKIKAWIKEQASKFVERYFNSENVDGSNP
ALNVLQRLCTATEQLSLQVDGGVECLVEICSIVSESDVSSFEIQHSGLVKQLLLYLTSKS
ERDVVSRDERIKRFLHIFYGSPVPGQEPLFRLEPTENGPLLALVHKMNSCLSQMEQFPVK
VHDFPSGNGNGSRGSQALKFFNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIER
YLVVRGYGRIREEDEDSDDDGSDDEIDESLAAQFLNSGSVRHRLQFYIADHLLPYNMTVY
QAVRQFSLQPEEERESTDDEANPLGRAGIWTKTHTIWYKPVREDEDGCKDSVGGKRGRAQ
TAPAKTSPRNAKKQDELWHDGVCPIVSNPLESYLISDPPEGITFDDPSLEVILLLRVLHS
ISRYWFYLYDNAVCKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPPWLTELGKTCPF
FFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINRDELLK
QAESVMQDLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLANP
KGSQEGTKYMFSSRGLFAVPFGRSTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGL
PFYKWMLRNESSISSHDLVNIDPGVATSIQHLEDIIRQKKRLELDKSYTRETLQQALESL
NMNGCSVEDLGLDFTLPGFPNIELKKGGKDVPVTIHNLEEYLRLVVYWTLNEGVSRQFES
FREGFESVFPLHHLQYFYPEELDQLLCGSKSETWDVKTLMECCRPDHGYTHDSRAVRFLF
EVLSSFDAEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCV
NYLKLPDYSSIEIMREKLLMAAREGQQSFHLS
NT seq
6219 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcaggattaatcacactgcaggggggtcactgcgccgatcacagaggaacaca
ctcgccaccaggttgcagtcagaacaaaccaaacaaaaaacaaattcccctcctgaaagt
aaaagatcatatactaaagcctcaaaagccccgcccacgcctgcagctggctcctcacgt
ggccacgcccctcgaagaaacagtctttctctctcttcactaagtcactctgcacctgac
ccggattcggaggcagcaggaagctccggccaacacgagcagcgcgaagtcgtcaacaac
cgtgccctcaaacgtagctctgcacctgatcacaacaacacctcctattcacccagcccg
gccaagcggcccaaagcgccgcccctcgagagctctgagcagttggaacctgctgaccct
actgctgactctgcccccgagctcccatccacagcaaggtctaaaaaacgtcgtttggca
tctgaacatccgactagcaggacactaaacaggaagagcggcacgtgccctgccaccagc
gcctcccacaaacgcaaaaaggcagacaccccattttgctcttcttcttcctcctcgttc
tcttcctcttcctcgtttttatccggctcgagcagcgagcaggccagccgctcatccaaa
ccctccaaactggcgtccaaatcggccgcctcggccaaatctgtgaccgattccgcctct
tcctcctccgcttcttcttcctctttcacatcctcttcctcctcctcttcttctgtggtg
gtcgcgggcgccagcggctgtgccccgccctcgcagggcgcccggctcaagcagggtaaa
gatcagagtaaatcgcggcgctcccgctccgcctcttcaccttctcctcgccgtagcagt
cgcgataaagagcacagcaaatccagcacagctgcctctaaattcgattggacaagccgc
ttcagtcccagagtgaacttgccgaagcccagactcgccctgcccggatcctccaaaccc
gaaacaccgtcagggtccagcaaacccggcccgagcggactgcaggccaaacttgccagt
ctgagaaagtccaataagaagcgaagtgagtctccccctgcagaactccccagctttagg
aggagcacacgacaaaagaccacgggctcctgcgccagcaccagtcggcgaggttcaggt
ttagggaagcgtggtgcagctgaaactcgccgacaggacaaaatggccgaaaacgacaac
aatcaggatggagccaattcatcacgcacagaggagacaccgcagggagcttcagcctcc
agttcagtagctggtgctgttgggatgaccacttccggagagagcgaatcggatgactca
gaaatgggccgattgcaagctctactggaggcacgtggtctgccccctcacctttttgga
cctcgcatgtcccaactgttccatcgtaccatcggcactggagcaagttcgaaggctcag
cagctgctgcagggtctgcaggcaacgggggacgagtctcagcagctacaggcagcgata
gaaatgtgccagctgttggtgatggggaacgaggagacactgggaggatttcctgtgaag
agtgttgtacccgctttgataacgctgttacaaatggagcataactttgatattatgaat
catgcatctcgtgctctaacctacatgatggaggcactgccacgctcttctgcagtagtt
gtagacgccattcctgtcttcctggaaaagcttcaggtgatccagtttatcgatgtagcc
gaacaagctctcactgcgctggagatgctctcacggagacacagcaaggccatcctgcag
gctggcggcttggccgactgtttgctgtatctggagtttttcagtattaatgctcagagg
aacgcgttagccattgccgctaactgctgccagagcatcacacctgacgagtttcacttt
gtagccgactcgctgcctctactcactcagagactcacgcatcaggataaaaaatcagtg
gagagcacatgtctctgtttcgcccggctggtagacaactttcagcatgaagagaatttg
ttgcagcaggtggcttcacgcgatctgcttaccaacatccagcagcttctggtggtgacg
ccgccggtgctgagttcaggcatgttcatcatggtggtgcgcatgttctccctcatgtgc
tccaactgccccaaccttgctgtgcagctgatgaagcagaatatcgcagagacactgcgt
ttcctgctttgtggagcgtctaatggaagttgtcaggaacaaatcgaccttgttcccaga
agcccccaggaactctatgagctcacttctcttatctgtgagctgatgccgtgcctcccc
agagagggcatttttgctgtagatgctatgttgaagaagggtagcgcacacactacagag
gccgcagtgtggcagtggagggatgaccgaggcctgtggcatccgtacaaccgcatagac
agtcgtatcattgagacggcccatcagaacggcgaggacgagatcagcctttcaacactc
ggccgagtttacaccattgacttcaactctatgcagcagatcaatgaggacacaggaacg
gcacggggaattcagaggaaacccaaccccctgatcaaccccaacactggccatgtggag
gtgcgtggtgaggatgcgcgtgctgagctgatgcgggaagaggcggagctagcacgctgc
tttattaagactctgtttggcgtgctatatgaggtctacagctcctcagccggccccgcc
gtcagacacaagtgcctcagagccatcctgcgcatcatatacttctcagactccgagctg
ctcaaggacgtgctgcgcaaccatgccgtctccagtcacatagcctccatgctgtccagt
caagacctgaagattgtggtcggctctctgcagatggctgacatcctcatgcagaagctg
cctgatgtgttcagtgtgtacttcaggagagaaggtgtgatgcaccaggtgaagaacctg
gctgagagcgagtcgttcctccccagtccacccaaggcgtgcacaagcggcatcaccgcg
gcaaccaccactatcaccacggcaaccacacccgccgcctccagcgtcacgccagatttg
ggctcaccgagtttccataacaacatggaggactcgctggacctcagcccacagggtcgt
ctgagtgatgttctgaagaggaagcgccttcctcgcagagtaccacgtcgtcccaaatat
tctccacccagagatgatgagaaagtggacaatcaggctaagagtcccactaccactgcg
tctcccaaatcatccttcctggcgagtcttaaccccaaaacctggggaaaacttggtgct
cagaacaatagcactaactctgagccgtctcgcacagccggagtcagcggccttgcacgc
acagctaacaaagacacggtctctaataacagggataagattaaggcatggataaaggag
caggccagtaagtttgtggaacgatacttcaattcagagaatgtggacggcagcaaccca
gcactgaacgttcttcagagactgtgtactgctacagagcagctcagcctgcaggtggat
ggcggcgtggagtgtttagtggagatctgcagcatcgtgtccgagtcggacgtgtcctcg
ttcgagattcagcacagtggcctggtgaagcagctgctgctctatttaacctccaaaagt
gagagagacgtcgtcagcagggacgagaggatcaaaagattcctgcacattttctacggc
agtcctgttccagggcaggagccactgttccggttggagccaacagagaacgggccactg
ttggcacttgtgcacaaaatgaacagttgcctgagtcagatggagcagtttcctgttaaa
gtgcatgactttcccagtggtaatggtaacggcagcagaggttctcaagcactgaaattc
ttcaacacacaccagctgaagtgccaactgcagagacacccagactgtaccaacgtgaag
cagtggaagggagggcctgttaaaatcgaccctcttgcactagtacaggctattgagaga
taccttgtcgttcgaggatacggccgaatcagagaggaggacgaggacagcgacgatgac
ggatcagacgatgaaattgatgagtcacttgcggctcagttcctgaattcgggtagtgtg
cgccaccggctgcagttctacatcgctgatcacctgctgccctacaacatgacagtgtac
caggcggtgcgtcagtttagcctgcagccggaggaggagcgtgagagcactgacgatgag
gccaaccctctcggtcgtgccggtatctggaccaaaacacacacgatatggtataagccg
gtcagagaggatgaggatggctgtaaggactccgtaggagggaaaaggggtcgagcacaa
acggctcccgctaaaacttcaccgcgtaacgctaagaaacaggacgagctgtggcacgat
ggtgtgtgtccaattgtgagtaacccgttggagtcgtacctcatatctgaccctccagag
ggcattacgttcgacgacccttcactggaggtcattctgctgttgagggttctgcactcc
atcagcagatactggttctacctctacgataatgctgtgtgtaaggagatcattcccact
agtgagttcatcaacagtaaactgaccgctaaagcaaacagacagctgcaggatccgctt
gtgatcatgactggaaacatcccaccctggcttactgagctgggcaagacctgtccgttc
tttttcccgtttgacacgaggcagatgttgttctacgtcactgcgtttgatcgtgaccgc
gccatgcagcgtctacttgacaccaaccccgagatcaaccagtcagattcgcaggacagc
cgcgtagcaccccgcctcgacaggaagaagcgaacgataaacagagatgagctgttaaag
caagcggagtcggtgatgcaggatctgggaagttccagagccatgctggagattcagtat
gaaaacgaggtggggacgggtcttggtccaaccttggagttctacgctcttgtgtctcag
gagctacagagagccgatctgggtttatggcggggagaggaggtcacccttgccaaccct
aaagggagtcaggagggcaccaagtacatgttcagctctcggggcctctttgctgtccct
tttggtcgcagcaccaagccagctcacatcgccaagatcaagatgaaattccgctttctg
ggaaaactcatggctaaagccatcatggacttcagactgctggatctgcccctgggcctg
cccttttacaagtggatgttgagaaatgagtcgtcaataagctctcacgatttggtgaac
atcgaccccggtgtggccacatccatccagcacctggaggacatcattaggcagaagaag
agactcgagctggacaaatcctacacaagggagacactacagcaggctctggagagttta
aatatgaatggctgttcagtggaggatttagggctggacttcacactgccagggttcccg
aacatcgagctgaagaagggaggcaaagacgtcccagtcaccatacacaacctggaggag
tacctaaggttggtggtgtactggactttaaatgagggtgtgtcccggcagttcgagtca
tttagggaagggttcgagtccgttttccccctccaccacctacagtacttctacccagaa
gagctggaccagttgctgtgtggcagcaaatcagagacgtgggacgtcaaaacgctgatg
gaatgctgcagaccggaccacgggtatacacacgacagtcgggcggtgcgattcctcttt
gaggtgttgagtagttttgatgcagagcagcagagactcttcttgcagtttgtgaccggg
agcccgagactgccagtaggaggtttccggagtttgaatcctcctctgacaattgtgcgc
aagacatttgagtcaacggagaacccagacgacttcctgccatcggtgatgacgtgtgta
aactacctgaagcttccggattattccagcatcgagatcatgagggaaaaactgttaatg
gcggcacgggagggccagcagtcttttcacctgtcctga
DBGET
integrated database retrieval system
