Ictalurus punctatus (channel catfish): 108264334
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Entry
108264334 CDS
T04658
Name
(RefSeq) U1 small nuclear ribonucleoprotein A
KO
K11091
U1 small nuclear ribonucleoprotein A
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108264334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108264334
Spliceosome [BR:
ipu03041
]
Complex A
U1 snRNP components
U1 snRNP specific factors
108264334
Complex B
108264334
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_5
DUF4523
RRM_MUD2_C
Motif
Other DBs
NCBI-GeneID:
108264334
NCBI-ProteinID:
XP_017321255
Ensembl:
ENSIPUG00000008841
UniProt:
W5U982
LinkDB
All DBs
Position
4:complement(29376874..29381816)
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AA seq
278 aa
AA seq
DB search
MSSQELRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTVKMRGQAFVIFK
EVNSASNALRSMQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVERDRKKEKKKPKTTESGG
SKKGAAAGMAGVPAAMPGMPPMSQAPRMMPMPGQPPYMPPPGMMPPPGMGPGQMPPGAMP
PGQMMPGQMPGQMPQQVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH
DIAFVEFDNEVQAGAAREALQGFKITQTNAMKISFAKK
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgtctagccaggagctgcgcctaaaccacaccatttacatcaacaatctgaatgagaaa
atcaaaaaagatgaactgaagaagtcgctttatgctattttctcacagtttggccagata
ctggatatcctcgttgcccggacggtcaaaatgaggggtcaggcctttgtaatcttcaaa
gaggtcaacagtgcctccaacgctctgagatctatgcagggctttcctttttatgataaa
cccatgcgcattcagtatgccaaacaagactcggacattattgccaagatgaagggcacg
tatgtggagcgggatcgcaagaaggagaagaagaagcctaaaactactgagtcgggaggg
tcgaagaagggtgctgctgctggcatggctggagttcctgctgctatgcctggaatgcct
cctatgagtcaagctcctcgtatgatgccaatgccaggtcagcctccgtacatgccgcct
cctggtatgatgccacccccaggtatgggccctggccagatgccaccaggtgccatgcct
ccaggtcagatgatgcctgggcaaatgccaggacagatgcctcagcaggtctcggagaac
ccgcctaaccacatcctgttcctcaccaacctgccagaggagaccaacgagctcatgctg
tccatgctgtttaatcagttcccggggttcaaagaggtgcgtcttgtcccgggtcgtcac
gacatcgcctttgtggagtttgacaatgaagtgcaggccggtgcagccagggaagcgtta
cagggcttcaagattacacagactaacgcaatgaagatctcgtttgccaagaaataa
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