Ictalurus punctatus (channel catfish): 108264354
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Entry
108264354 CDS
T04658
Name
(RefSeq) E3 ubiquitin-protein ligase Siah1 isoform X1
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04115
p53 signaling pathway
ipu04120
Ubiquitin mediated proteolysis
ipu04137
Mitophagy - animal
ipu04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108264354
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
108264354
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
108264354
09143 Cell growth and death
04115 p53 signaling pathway
108264354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108264354
Enzymes [BR:
ipu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108264354
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
108264354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
Trm112p
Motif
Other DBs
NCBI-GeneID:
108264354
NCBI-ProteinID:
XP_017321276
Ensembl:
ENSIPUG00000020372
UniProt:
A0A2D0QU72
LinkDB
All DBs
Position
4:12571166..12597853
Genome browser
AA seq
330 aa
AA seq
DB search
MSPTARLQPVYSWKGVFKLFACVAAQTASKPKEVHTFQEKKIALLGNHMDEEMSRQTATA
LPTGTSKCAPSQRVNTTASNSDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLTCC
PTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEVTLPHTDKAEHEELCEFRPYSCPCPG
ASCKWQGSLDAVMPHLLHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLV
LEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIM
NSDCLVFDTSIAQLFAENGNLGINVTISMC
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgtctcccaccgctaggctacagcctgtctactcatggaagggggtgttcaagctcttc
gcatgcgtagctgcccaaacggccagcaagcctaaagaggtccacacatttcaagagaag
aaaatagccttactggggaatcatatggacgaagaaatgagtcgccagactgccaccgcg
ctgcccacaggaacctcaaagtgcgccccctcccagcgtgtgaacaccactgcctccaac
agtgacttagccagcctgttcgagtgcccggtgtgttttgactatgtgctgcctccaatc
ctgcaatgccagagcggccaccttgtgtgcagcaactgccggcccaagctgacgtgctgt
ccgacatgccgtggcccgttgggctccatccgtaacctggccatggaaaaggtggccaat
tcagtgctgttcccatgcaagtacgcctcatcgggctgtgaagtgacgctgccgcataca
gacaaggccgagcacgaggagctgtgcgagttccggccgtactcgtgcccatgtccgggt
gcttcgtgcaagtggcagggctcgctggatgccgttatgccgcacctactgcaccagcac
aagtccatcaccacgctgcagggcgaggacattgtcttcctggccacggacatcaacctg
cctggtgctgtcgactgggtcatgatgcagtcctgcttcggtttccacttcatgctggtg
ctggagaagcaggagaagtatgatgggcaccagcagttctttgccatcgtgcagctgatt
ggcacacgcaagcaagcagaaaatttcgcctaccggctggagctgaacggccaccggcgg
cgtctcacctgggaagccacgccgcgatccatccatgagggcattgccacagccatcatg
aacagtgactgtctagtgttcgacacctctatcgcccagctgtttgccgaaaatggcaac
ctgggcatcaacgtcaccatatccatgtgctga
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