Ictalurus punctatus (channel catfish): 108264415
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Entry
108264415 CDS
T04658
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108264415
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ipu01009
]
108264415
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108264415
03029 Mitochondrial biogenesis [BR:
ipu03029
]
108264415
Protein phosphatases and associated proteins [BR:
ipu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108264415
Membrane trafficking [BR:
ipu04131
]
Autophagy
Autophagosome formation proteins
ULK complex
108264415
Mitochondrial biogenesis [BR:
ipu03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
108264415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
DUF3020
DUF6950
Motif
Other DBs
NCBI-GeneID:
108264415
NCBI-ProteinID:
XP_017321401
Ensembl:
ENSIPUG00000000136
UniProt:
A0A2D0QUJ0
LinkDB
All DBs
Position
1:complement(2471574..2491264)
Genome browser
AA seq
1593 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQAKYKIATQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSVENEMEMKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTASYQKLLLKFDVAYTNYQQ
DFEDIKLKLTKLGTAVSVMAKIPLLECLTRHSYRESLEKSSSPRPRTEAEPDVGEGRQTS
SQSAILCPTEVRQTSGGSAAQDGAVGRSSSSNCGLQEALEEEKEQDEADKMADAPSFNVT
LLDWINVQDRPNDVEAVVRKCFDSINRLDPRIIQPFLVECRDTITKLDNQNMKAIKGLED
RLYALDQMIASCKKLVNEQKELAQGFLANQMRAENLKDNSVLPDLCLSHANQLMIMLTNH
RKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELLERVRVVE
ALSTVPQMYCLAVVEVVRRKMFIKHYREWANALVKDGKNLYEAEKVKRETFGKLFRKSFL
RNRLFRGLDSWPPSSFCTRKPRKFDFELPDISLNDLQYLKSCCPVEVQPFLRVPSLCDFE
PLNHHTEALHQLVQAARSVDEMSQTITDLLSELKVSGNQSARRPSSESRTETMPTSSKTL
PALSIQSPPTQPLSLPAPLEDLSPDSIDAHTFDFETIGHPNMDPVLQQGSLDLDSLAESP
ESDFMSAVNEFVIEENVTSPNPISDPTSPEMMVESLYSSVINAIDSKRIQDTTMLERENS
RITKLKLTIDKYRSAAEESHSNMRKVKDDLCHFQGLVLKEQRDFGFALKKMSAEIHGVVN
NIRRRQEEELREAHQNDLQKLKDDHAKHVLRLTDELEGNHKIVRDVQRAMLELEGLVERK
EKELGQMEGERERLLQEIRNSHQQAVQELEKNLSERSKALQDTLRSRDALADQLDGLQVE
IERKIRQEMENAEKNHLQDLEARLKNEHRAQMEILERESQGALDTLTLENQAKLKELVES
QLTERKKRESLIKDYEARIGELADTRCKLEMEMALKETETEDLRLQYEDAKNQQEEALKA
EMESRTKALREQVEALTQQLQKKNEEHEQGLAELRALMRLEKDHCISELVERHDEESTLL
RHEFSALKQKSQDAEKDREERLQEIQRQLEDQLVTLRKEREEEQRAFSDKELDLQTAVSD
LQAVNSLLSGQLEEERQEARRTVEEEKEALKHALLQKDELEAKLLGKIKLLEAQLEERQS
TDNYRGADAGDGKSVDVALQQRLDEERASLLGQLELLERKKNEELQNLKTLLIAEQQTNF
NTVLTREKLKKEQIINELSEKLKKVMLQQEKDKSLIESLSEDRATILQEKKHLEEELNRL
RSSALVSSAFFVPNPVAVAVEMHGAYGPVPAEVPVLPGLDSERLGSVAALQDDDRVDSAV
EASMMTVHDNVPMLSEEKQRILMLERTLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAI
RDFQVGDLVLIILDERHDNYVLFTVGPTLYFLHSESLAALDLKPATGATRRPWVLGKVLE
KEYCQAKKAQNRFKVPLGTKFYRVKAVPWNKKV
NT seq
4782 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtacgtgttccaggtcaataacgggagcacgttgacgttcgacactgaacta
gccgtgcaaactgttctggacctcaaacatgccatccaggctaagtacaagatcgccact
cagcatcaggtgctggtggttaatggcggcgagtgtatggtggccgagaggagagtgtgt
agctacagtgccggcacggatacgaaccccatctttttattcaacaaagagatgatcttg
tgcgaccgtgcgccgacgatccccaaaaccaccttctccgtcgagaacgagatggagatg
aaggtggaggagtcgctcatgatgccggccgtatttcacaccgtggcctcgcggacgcag
ctcgctgtggaaatgtttgaagttgcgaagaagctgtgctccttctgtgaacgcctggtc
cacgacgaacaccttcagcaccagggctgggccgccatcatggccaacctggacgactgc
accgcgtcctatcagaagctgctcttgaaattcgacgtggcctacactaattaccaacag
gatttcgaagacatcaaactgaagctgacaaagctcgggacggccgtctcagtcatggct
aagatccctctgctggagtgcctgacccgccacagctacagagaaagcctggagaaatcc
tcttcacctcgtcccaggaccgaggccgagcctgacgtcggagaaggacgacagacgtcc
tcccagtcggccatcttgtgcccgacggaggtccggcagacttcaggaggctctgcggct
caggacggagcggtggggaggagcagcagcagcaactgcgggcttcaagaggcactggag
gaagaaaaggagcaggacgaggcggacaaaatggcggacgctccttcgtttaacgtcacg
ctgctggactggatcaacgtacaggaccgacccaatgacgtcgaggctgtagtgaggaag
tgcttcgactccatcaacagactcgatccgcggattattcagccgtttctcgtcgagtgc
cgggacaccatcaccaaactggataatcaaaacatgaaggccataaaggggctcgaagac
agattgtacgcactcgaccaaatgatcgccagctgcaagaagctagtgaacgaacagaag
gagctcgctcagggatttttagccaatcagatgagggctgaaaacctgaaggacaactcg
gtgctgccggacctgtgtctgagtcacgccaatcagctgatgatcatgctgaccaaccac
aggaagctgctggacattaagcagaagtgcacgactgccaaacaggaactggccaacaac
ctgcaagtccgtctcaaatggtgctgctacgtgatgctgcatgcggatcaggatggcgag
aagctccaagcgctgctgcgcctcctgaccgagctgctggagcgagtgcgcgtggtggaa
gccctcagtaccgtcccgcagatgtactgcctggccgtggtggaggtggtgcgccggaaa
atgttcattaaacactacagagagtgggccaatgccctggttaaagatgggaaaaacctc
tatgaggcagagaaggtcaaaagggagacgtttggcaagctgttcagaaagtcgttcctc
agaaatcgcttgtttcgaggactcgactcatggcctccctcgtcgttttgcacaagaaag
cctcgcaagtttgactttgagcttccggacatttctctgaacgacctgcagtatctgaag
agctgctgtcctgttgaagtgcagccttttctcagggttccatcactatgtgattttgag
ccattaaaccatcatacagaagctcttcaccagctggtacaagcagctcggagtgtagac
gagatgtctcaaaccatcacagacttactgagtgaactgaaggtttctgggaaccagagt
gcacggagacccagctcggaaagcagaacagagaccatgcccacctcatctaaaaccctt
cctgccctcagtatacagtctccacccactcagcccctctcccttccagctccattagaa
gatctgtcccctgacagtatagacgcccatacgtttgactttgaaaccataggacacccc
aacatggatcccgtgctccagcagggctctctggacctggactctttagccgagagcccg
gagtcagacttcatgtcagcggtcaatgagtttgtcatcgaagagaatgtaacgtcaccc
aatcccatcagtgatcctacaagtcctgagatgatggtcgagtctctttactcctctgtc
atcaacgctatagatagcaaaaggatccaggacacgaccatgctcgagagagagaactcc
agaatcacgaagctcaagctgaccatagacaagtaccgttcagctgctgaggagtcgcac
agcaacatgaggaaagtcaaggatgacctctgtcatttccaaggacttgttttgaaagag
cagcgggactttggcttcgccttgaagaagatgagcgcagaaattcacggcgtggtcaac
aacatcagacgtcgtcaggaagaggaactccgagaggcacaccagaacgacctccaaaag
ctgaaagacgatcacgcaaagcacgtcctccggcttactgacgagttggaagggaaccac
aagatcgtccgggacgtccagagggccatgctcgaactcgaagggctcgtggaaaggaaa
gagaaagagcttggtcagatggagggtgagagagaacgcttactccaggagatacgcaac
agccaccagcaggctgtccaggagttggagaagaacctttcagagcgaagcaaggcactt
caagacaccttgcgttccagagacgccctcgccgaccagctggacggcctgcaggtcgag
atcgagaggaagatacgccaagaaatggagaacgcggagaagaaccatctccaagacttg
gaagctcgtctgaaaaatgagcacagagcgcaaatggagatcctggaacgtgaaagccag
ggtgctctagataccctaacccttgagaaccaagccaaactaaaggaactcgtggaatcg
caattgacggaacggaagaagcgcgagagcctcatcaaggactatgaggcacgcatcggt
gagctcgccgacactcgatgcaagctggaaatggaaatggctcttaaagagaccgaaacg
gaagacctacgcttgcaatacgaggatgccaagaaccagcaggaggaggcacttaaggcc
gagatggagtcacggacaaaggccctccgggagcaagtcgaggcgctgacgcagcagctg
cagaagaagaacgaggagcatgagcaaggcctcgccgagctgcgcgctctcatgcgcctc
gagaaggaccactgcatctcggagctggtggagcggcacgatgaggagagcacgctgctg
cgccacgagttctccgcgctcaagcagaaatcgcaggacgccgagaaggaccgcgaagaa
cgcctgcaggagatccagcgccagctggaggaccagctcgtgactttacgcaaggaacgg
gaggaagagcagagggcgttcagcgataaagagctcgacttgcaaaccgccgtcagtgac
ctgcaggccgtaaactcgctcctgtcagggcagctggaggaggagcgtcaggaggcccgg
agaaccgtagaggaggagaaagaggcgctaaaacacgccttactgcagaaggacgagctg
gaagcgaagctgttagggaaaattaaactactcgaagctcaacttgaggaaagacaatcc
actgacaattacagaggagctgacgccggagatggaaaatctgtggacgtcgcattgcag
cagaggttggatgaagaacgagcgtccctcctgggccagctggagctgctggagaggaag
aagaacgaggagctgcagaatctgaagaccttgctgatcgctgagcagcagactaatttc
aatactgtactgacgcgagagaagttaaagaaggagcagatcatcaacgagctgagtgag
aagctgaagaaggtcatgctgcagcaggagaaggataagagcctgattgagtctctctcc
gaggaccgagccaccatcctgcaggagaaaaaacacctagaggaggagctcaaccgcctc
cggagctccgccctcgtctcctctgctttctttgtgcccaatcccgtcgccgttgccgtg
gagatgcacggagcgtacggacctgtccctgctgaagtccccgtcctgcctggtctggat
tcggagcggctggggtccgtggccgcgctgcaagacgatgaccgggtggactctgctgtc
gaagcgagcatgatgacagtccatgataacgtgccgatgctgtctgaggagaagcagcgg
atactgatgttggaaagaactctacacatgaaagaagaggagaacaagcggctcagccaa
agactgatgtcacagagcatgtcgtccgtgtcctcgaggcattcggagaaaatcgccatt
cgagattttcaggttggcgatttggtcctcataatcctggacgagcggcacgataattac
gtgctgttcaccgtcggccccactctctacttcctgcactcggaatctctcgctgcgctg
gacctcaagccggcgactggagctacgaggagaccctgggtcctggggaaggtcctggag
aaagaatattgccaggcaaaaaaggcccaaaaccgcttcaaagttcctttgggcaccaaa
ttctaccgagtaaaagccgtgccatggaataagaaggtgtaa
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integrated database retrieval system
