Ictalurus punctatus (channel catfish): 108264438
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Entry
108264438 CDS
T04658
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108264438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108264438
03012 Translation factors [BR:
ipu03012
]
108264438
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108264438
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108264438
Translation factors [BR:
ipu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108264438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
Adhesin_P1_N
AAA_16
TsaE
PhoH
TFX_C
Motif
Other DBs
NCBI-GeneID:
108264438
NCBI-ProteinID:
XP_053534145
Ensembl:
ENSIPUG00000010835
UniProt:
A0A9F7R1C0
LinkDB
All DBs
Position
4:complement(31966774..32006620)
Genome browser
AA seq
1027 aa
AA seq
DB search
MSYGYGRGRGRRGGGGGGGGGGGGRGGGGGGGERWSSDWEARDEHPRGGGGRGKHPPHLK
GREIGLWYAKWGGLKRAEAERKSRAVVQMDESREQHITQLLNSVQREPSRDYGPAVPPYR
QVKPEPSGHSYFDGDDPPEQPQKTVKVAKIESVKVKEEEAEIKTEVKEEMKTEVKEERVD
RDLEYLVQEIDRKPSLDEELKSELQSKRQNAKYLEMLTFREKLPSYSMREELVKLIQANR
VVVVSGETGCGKTTQVTQFILDDYIRRGMGSLCRVVCTQPRRISAISVAERVAAERAESV
GEGKSCGYQIRLQSRLPRKQGSVLYCTTGIILQWLRSDPCLSSISHLVLDEIHERSLHSD
VLLTIVKDLLSHRDDLKVVLMSATLNADKFSKYFDRCPMVHIPGHAFPVKEYLLEDVVEM
LRFRPQQQQDRRPRFRRGFMNGQNVRPEKQEKEAEYKESWPCFARTLGDRFSDGTIDTLE
MMDEDDKINLELIVALIRHIVLNEDDGAILVFLPGWDNISSLNDLLMADQMFKSDKFVII
PLHSLMPTVNQTQVFKRPPAGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQNN
ISTMTAEWVSLANAKQRKGRAGRVSPGKCYHLYNGLRASLLDAYQLPEIQRTPLEELCLQ
IKILKLGPIASFLRKTLDPPSDRAIELAITHLMDLNALDRNEELTPLGFHLARLPVEPHI
GKMILFGALLACLDPVLTIAASLSFKDPFFIPMGKEKIADQRRKILSKNTKSDHLTVVNA
FQGWEEAKRRGYRYEREYCWDNFLSANTLQMLQNMKGQFAEHLLAAGFVSSKDPKHLGAN
INSENEKLLKAVIVAGLYPKVAKIRPSPHKKRPIPAKVYTKADGKVCIHPKSVNSEETQF
HYTWLIYHLKMRTTSIFLYDCTEVSPFSLLFFGGDISIQKDKEQETIAVDEWIVFQSPAR
IAHLVKNLKKELDLLLEEKIKRPRPVDWSDRASSDCAVISAIVDLITTQETATSSQEPYR
KSHQHWD
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgagttatggctacggaagaggaaggggccggagaggaggaggaggaggaggtggtggt
ggtggtggaggcagaggaggaggaggaggaggaggagagcggtggagctccgactgggaa
gcccgggatgagcatccccgaggcggcggaggccgcgggaaacacccgccgcacctgaaa
ggcagagagatcggactgtggtacgccaaatggggaggactgaaacgtgcagaggccgag
aggaagtcgagagccgtagttcagatggacgagtcgagagagcagcacatcacacagctg
ctcaattcggtccagagagaaccgtcccgtgactacgggccggccgtcccaccgtaccgg
caggtgaagccggaaccgagcggccacagctactttgatggcgacgatcctccagaacag
ccgcagaaaacggtgaaagtggctaaaatcgagtcggtgaaggtgaaggaagaggaggcg
gagataaagaccgaggtaaaagaggagatgaagaccgaggtaaaagaggagcgcgtcgat
cgcgatctggaatacctggtgcaggagatcgatcgaaagccttcactggacgaggagctg
aaaagcgagcttcagagcaagagacagaatgctaaatatctggaaatgctgacgtttcgg
gagaagctgccttcatacagcatgagagaggagctggtgaagctgatccaggccaaccgt
gtggtggtggtgagcggagaaaccggctgcggcaaaaccacgcaggtcacgcagttcatc
ctggacgactacatccggcgcggcatgggctcgctctgcagggtggtgtgcacgcagccc
cgacgcatcagcgccatatcggtggccgagagggtggcggcggagagggcggagtccgtc
ggagaggggaagtcctgcggatatcagatccgtctgcagagccggttgccacggaaacaa
ggctcggtgctgtattgtacgacgggaattattcttcagtggctgcgctcggatccgtgt
ctgtcgagcatcagtcacctggttctagacgagatccacgagcgcagcctgcactcagac
gtcctcctcaccatcgtcaaggacctgctgagccacagagacgacctcaaggtcgtgctc
atgagcgccacgctgaacgccgacaagttcagcaagtacttcgatcgctgccccatggtc
cacatcccgggtcacgccttccccgtgaaagagtacctgctggaggatgtggtcgagatg
ctcaggttccggccgcagcagcagcaggaccgtcgtccccgcttcaggagagggttcatg
aacggccagaacgtgcgtcccgagaagcaggagaaagaagcagaatacaaagagagctgg
ccgtgtttcgctcgcacactcggagacaggttctctgacggcaccatcgacaccctggag
atgatggacgaggatgacaagatcaacctggagctgattgtagcactcatccgccacatc
gtgctgaacgaagacgacggagctatcttggtgttcctacccggctgggacaacatcagc
agcctgaacgacctgctcatggccgaccagatgtttaaatctgataagttcgtgatcatt
ccactgcactcgctgatgcccacggtcaaccagacgcaggtttttaaaaggccacctgcc
ggagtccggaagatcgtgattgcaaccaacatagcagaaaccagtatcactatagacgac
gtggtgtacgtgatcgatggaggcaaaattaaggaaactcacttcgacacgcagaacaac
atcagtacgatgacggcagaatgggtgagcctcgccaacgccaagcagaggaaggggcgc
gccggcagggtgtctccaggtaaatgctatcacctgtataacggcttgagggcgagtctg
ctggacgcctaccagctccctgagatccagcgcacaccgctcgaggagctctgtctgcag
attaaaatcctgaaattgggcccaatcgcatcattcctgaggaagactctggaccctccg
tcagacagagccatcgagctggccatcactcacttaatggatctgaatgcattggaccgg
aatgaagagttgaccccgttgggattccacctggcccgtctgcccgtggagccacacatc
ggaaagatgattctgttcggcgctctgctcgcctgcctggaccctgtgctgaccatagca
gctagccttagctttaaagacccgttcttcataccaatggggaaggaaaaaatcgccgac
caaagaagaaaaatcctgtccaaaaacaccaagagtgaccacctgactgtagtcaacgcc
ttccagggctgggaggaagcgaagaggcggggctacaggtacgagcgggaatactgctgg
gacaacttcctgtcagccaacacgctgcagatgttacagaatatgaaaggacagtttgcg
gagcatctcttggccgctggatttgtgagcagtaaagacccaaaacatctcggcgccaac
atcaactccgaaaacgagaagctcctgaaggcagtcatcgtggccggcttgtatcccaaa
gtggccaagatccggccgagcccgcacaagaagagacccataccagcgaaggtgtacacc
aaagccgacgggaaggtgtgtatacacccgaaatctgtcaactccgaggagacgcagttc
cactacacctggctcatctatcacttgaagatgagaaccaccagtatctttctgtacgac
tgcacagaggtgtctccattctcgctcctcttcttcgggggtgatatctccatccagaag
gacaaagagcaggagaccatcgccgtggacgaatggatcgtcttccagtctcccgctcgc
atcgcccacctggtcaagaacctgaagaaggagctggatctgctgctggaggagaaaatc
aagcggccccgccccgtcgactggagcgaccgcgcctcgagcgactgcgccgtgatctcg
gccatcgtcgacctcatcaccacgcaggagaccgcgacgtcctcgcaagagccgtacagg
aaaagccaccagcactgggactag
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integrated database retrieval system
