Ictalurus punctatus (channel catfish): 108264546
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Entry
108264546 CDS
T04658
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108264546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108264546
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108264546
mRNA degradation factors
5'-3' decay
Decapping complex
108264546
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
Beta-prop_WDR3_1st
WD40_WDHD1_1st
WD40
Beta-prop_WDR5
Beta-prop_TEP1_2nd
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_HPS5
Beta-prop_EML_2
WD40_Prp19
WDR55
Beta-prop_WDR3_2nd
CowN
Motif
Other DBs
NCBI-GeneID:
108264546
NCBI-ProteinID:
XP_053533971
Ensembl:
ENSIPUG00000003325
UniProt:
A0A9F7TIC5
LinkDB
All DBs
Position
4:complement(14853719..14891331)
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AA seq
1382 aa
AA seq
DB search
MASSSSIDIEGATQHLRDMLKLDRPTNSTDSTASESQRKTSCNGELNGLLGNDLIGAGVR
SAMMEPTTHSSDNMSMAETQTISLTGDDDSTCIPITANNVVIVASRDSSIDSKARGSNKV
KIQPVAKYDWEHKYYYGNLIAVSNAYLAYAIRGANNHYMIRVLQLASTERTLLKGFTGAV
TDLAFAHLDSNLLGCVDEAGNMFIWQLTSQNSKIQDEVIVHIQRPEDTPLNSNRRLIWCP
FIPEDNEENPEDGCQTLALLHEDRAEVWDLDILRSNNTTWPVDATEIKEGYIAIKGHTAR
ISEGALSPDGTVLATASHDGYVKFWQIYIEGLDQPRCLHEWQPHNGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTINFSPDPVNSSVLPSLKASLDLSAEC
LILTDVQRKVLYVMELLQDQEKGHASFMAVSEFLLTHPVLSFGVQDVSRARLRHTEVLPP
DEESESMTTEGSQGPLESKSGIQIKLYCVHTKSLQDVQIWFQPNQGAAASLFMPTCSGSQ
DGFGFADPLTDLCMEVLSSDKESGASGSQTDLCKIPSLPAPADFLSPSGSTMPKLMTPDA
FMTPSASVPASPGSSASSLTIVTAMSSSDSGPRAAEDLTQSPKLCTDATSTSLNLSASTS
SPRANSILISGLGENIQVLSTPNPSMSLDLQAMEPVLLPQASPTRARSPDVISSASTAMS
QDIIPEIASETLSRGLAEARDPLQGLQDSMASAASALHLLSPLELSGGASGDGEQRLSST
PSLLETALSQENAVNVVVSSCSESGASRSWPAAPDITRETRNSLRDNGLGECSREDLKDM
HMSSPFHRRTYHLTQNDSQDASAEQSDHDDEVASLASSSGNCGSRASHRLPVKDWKTSPR
GSPKLKRKSKKDEGDSSQTRHLENQMSMEVQEELLLLLRSQQRELDELRQSQQELLQRLT
GHMDAVQSSIMAHVEHVLLTQQEQGQRTMERVLADGHTRNQQLQEHMAQQLAHTLGTTVS
NRLDKVLREEMKKSVPQTITKSLEPLTGQMSNVIAAKLAAVEATLKENVTKVVKSKNTTD
AIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDSFKQGTNEYIQQLEMHV
KNRKQREQDARDPVIGQLQQMIDSFQTSQDQLATTVAASVRTEVQHQLHMIVGNMQDSIL
SQVQRIVKGEVSQAMKEQQAVVTSSIMQAMRSAASTPVPTAHLDFQAQQASILQLLQQGQ
LNEAFQQALSAADLNLVLYVCETVDSQQVFGQSPCPLHQAVLLSLIQQLSTNLVTRTDLK
ISYLEDAVMNLDHGDPVTRDHMSAVLSQVRQKLFQFLQQDPHSSLSKRGRRLLMMLQGLV
NH
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atggcttccagttccagtatagacatagaaggcgcgactcagcacctcagagacatgtta
aaactggaccgacccactaactcaaccgacagcactgctagtgagagccagcggaagacc
tcgtgtaatggagagctaaacggcctgctgggaaacgacctgattggtgcaggagttcga
agcgctatgatggaaccaacaactcacagctctgacaacatgagcatggcagaaactcag
acaatttccctgactggtgacgatgactctacatgtattcccataactgctaacaacgtg
gtaattgtcgccagtcgagactctagtattgacagtaaagctcgtgggagtaacaaggtt
aaaatccagccagtggcaaaatatgactgggagcacaagtattactatggcaacctaata
gcagtgtctaatgcatacttggcatatgccattagaggtgccaataatcactatatgatc
cgcgtcctgcagttggcctcgacggagcgcacgctgctgaagggtttcaccggggccgtc
acagacctggccttcgcccatcttgactccaacctgctgggctgcgtggatgaagccggc
aacatgttcatctggcagctcaccagccaaaatagcaaaatacaagatgaagtgattgtt
cacatccagcgacccgaagacacaccgctgaactccaaccgcagactcatctggtgcccc
ttcattcctgaggacaatgaggagaacccagaggatggctgtcagacactggcattgctg
catgaagatagggctgaggtttgggaccttgacatcctgcgctctaacaacaccacatgg
cctgtggatgctacagagattaaagagggctatatcgctattaaaggacacacagcgcgt
atcagcgagggagcgctgtctccagacggcaccgttctcgccacagccagtcatgatggc
tatgtcaaattctggcagatctacattgaaggactggaccaaccgagatgccttcatgag
tggcagccacataacggaaggcctctctcctgcctcctcttctgtgacaaccataagaag
caggacccagaagtgccgttctggcgattcttaatcaccggagcagatcagaaccaggaa
ctgaagatgtggtgcacggtgtcatggacatgtctacagactattaattttagtcctgac
ccggtaaactcgagtgtcctgcccagtctgaaagctagtctggacctgtctgctgagtgt
ctcatccttacagatgtgcagaggaaggttctgtatgtgatggagctcctccaagatcag
gagaagggccatgccagctttatggctgtctctgagttcttgctcacacacccagttctg
agctttggggtccaggatgtcagtcgtgctcgcttgcgccacactgaagtcctccctcca
gacgaggagagtgaaagcatgactacagagggaagccagggacctttggagtcaaaatca
ggaatccagatcaagctttactgtgtgcatacaaagtcccttcaagatgtgcagatctgg
ttccagcccaaccagggtgctgctgcctccctgtttatgcctacatgctctggctcccag
gatggctttggctttgccgaccctttgactgatttgtgcatggaggtgttgagctcagat
aaggaatctggtgcaagcggttcgcagaccgacttgtgtaaaatcccctctctcccagct
ccagctgacttcctgagtccctctggctcgaccatgcccaaactcatgaccccagatgcc
ttcatgacaccaagcgcatctgtaccagcctcccctggcagcagcgctagcagtttgact
atagtaacggccatgagcagctctgacagtggtccaagggctgcagaggacctcacccaa
agccccaagctgtgtacagatgcaaccagcaccagcttgaacctcagtgccagcactagc
agcccaagagccaactcgatcctcatttcaggcctgggcgagaacatccaggtgctgtct
actccgaacccctccatgtctctggacctccaggccatggaacctgtgctgctgccccag
gcgtcccccactagagctcgctcccctgacgtaatctcttcagcctccacagccatgtca
caagacatcatccctgagatcgcctccgagacgttgtcgagggggttggccgaggcacgc
gaccccctccagggccttcaggacagcatggcgtcagcagcctcagcactgcatctgctc
tcaccgctggagctgagtggaggagcatctggagatggcgagcagcggctcagcagcaca
ccctcgttgctggagacggcactgtcacaggaaaatgctgttaatgtcgttgtatcatct
tgctctgaaagtggtgccagccgcagttggcctgcagcacccgatatcacacgagaaaca
aggaacagcctgcgagataacggtctgggagaatgctctagagaggacttgaaggacatg
cacatgtcatcccccttccacagacgcacctaccacctaacacagaatgacagccaggat
gccagtgcagagcagagtgatcatgatgatgaggtggctagtctggcatcatcttcagga
aactgtggctctcgagcttctcacaggctgccagtgaaggactggaagacctcacctcgc
ggctcgcccaaactcaagcgcaagagcaagaaagatgaaggtgattcctcacagaccagg
catttggaaaatcagatgagcatggaggtacaagaggagctgctgttgctgcttaggagc
caacagagggagctggatgagctacggcagagccagcaagagctgttgcagaggctcacg
ggccacatggatgctgtccagagctccataatggcccacgtagagcacgtcctactcacg
caacaggaacagggacaaagaacaatggagcgggtgttggcagatggacacacacggaac
cagcagctccaggagcacatggcacagcagctggctcacaccttgggcaccactgtctca
aatcgcctggataaagtgttgcgtgaggagatgaagaaatctgttcctcagaccataaca
aagagtctggaacccttgactggacagatgagtaacgttattgcagccaagcttgctgca
gtggaggccacactaaaggagaatgtcaccaaagtcgttaagtctaagaacactaccgat
gccattggccgggccgcagccgaagccatgcaaggtcctattcaagcagcctacaaagac
gccttccaaagcattgtgctacctgtgtttgaacgtggctgccagtccatgtttcagcag
ataaatgacagcttcaagcagggaaccaatgaatacattcagcagttggagatgcacgtc
aaaaacaggaagcagcgtgagcaagatgctcgagaccctgtaatcggtcagctgcagcag
atgattgattcattccagacttcccaagaccagctggccaccacagtagcagccagtgtg
cgcactgaggttcagcaccaactccacatgattgtgggaaatatgcaggattcgatcctg
agccaggtgcagcgcattgtgaagggcgaggtgagccaggccatgaaggagcagcaggcg
gtcgtcacatccagcatcatgcaggccatgcgctcagcggccagcacaccagtcccaact
gcccacctcgacttccaggcgcagcaggccagcatcctgcagctgctgcaacagggccag
ctcaatgaggcgttccagcaggccttgtctgcagccgatctgaacctggtactgtacgtg
tgcgagaccgtcgactctcagcaggtgtttggccagagcccctgccccctgcaccaggcc
gtgctgctctcactcatccagcagctatccaccaacctggttacacgcaccgacctcaag
atcagctatctggaggatgcggtgatgaacctagatcatggtgacccagtcaccagggac
cacatgagtgccgtgctgtcacaagtgcgtcagaagctgttccagttcctgcagcaggac
cctcacagctccctgagcaagcgtggccgccgcctcctgatgatgctgcagggtcttgtt
aaccactaa
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integrated database retrieval system
