Ictalurus punctatus (channel catfish): 108264743
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Entry
108264743 CDS
T04658
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108264743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108264743
03036 Chromosome and associated proteins [BR:
ipu03036
]
108264743
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108264743
Coactivators
SAGA/TFTC/STAGA complex
108264743
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
108264743
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
108264743
NCBI-ProteinID:
XP_053534129
Ensembl:
ENSIPUG00000009666
UniProt:
A0A9F7R0Q4
LinkDB
All DBs
Position
4:complement(30903176..30998346)
Genome browser
AA seq
1040 aa
AA seq
DB search
MAGASDPLEDMLFSEVDEKAVSDLVGSLESQLVGRSGNKAGGAKQHIGKALSSRANTPSE
QQQQQHHPHHQQQHKAGTERGSDPAEITPAGRAASPESCVKASTSVSRPHSSSSTSTSPS
SSSSPSSSAKISGVCAQDGATSPAVSISAAGRRATASGTVETPRHYGTRKKRGGARGSAA
SRSVNGAATSSVISSNSPSSAGAAVSMAMARANSSTYTVSSASRSVALDKGTPKIALHRL
PSHIVASIAQGRNGTSVSALIQQGRVNHGKNAESAQSGEDQTKADVQQVQPGSVNSVPSA
VCIAVTTQPQSQPQSQPQTQPQSQPQTQTQSQTQTQSQPQTQTQSQPQTQTQSQPQTQTQ
SQTQTQSQPQTQTQTRSQPQTQTQSQPQTQTQAQTQIQPVTQPITQSQPQTISQPQSQPQ
SQPRSQPQPPLQSPSQLQPQTQSQMQHQSTLQPQTQSQPQTQSQAQPQLQPQPRPAAPAQ
RITAPQLIVRPPQQQATIQLPPGFTIPAGMVLVRTELGQLMMVPQQALAQAQAQSALSPR
PAAPTTTATFRVTTPQRAPLAVTTPQQHPAALAPQGPTLAPPTAAGPAPGATVISQEMQE
NVKKCKNFLATLIKLASHNSPSPETSRNVKALVQDLLDAKIEPEEFTSRLQTELKSSPQP
YLVPFLKKSLPALRLSLLNSQQSLTQPPQPKTTASPTVAVAGAVTMGNAPRQPNSTVTPP
QNIKRAGTVGGQVRMPVVITQTVRPAGAVGKSPVVQAGKSPSAVSVQLSGAQKNKVNDPG
GGSFRDDDDINDVASMAGVNLSEESARILATNSELVGTHIRSCKDEAFLPTGLLHRRILE
TAKKFGVTEVPVEAVNFIAHATQTRLRTVLEKVSFIAQHRMDSSKDEEWYEQSSDVRSQL
KFFEHLERLEKQRKDEQEREILLKAAKSRSRQEDPEQARLKQKAKEMQQQELAQMRQRDA
NLTALAAIGPRKKRRVDSPGATSGTEVSGSSVGSPASSLSSSRQFHRQRITRVNLRDFIF
YLEQERETSRSLLLYRALLK
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcctccgaccctctggaagatatgctgttctccgaggtggacgagaaggcg
gtgagcgacctggtgggctcgctggagtcgcagctcgtcggccggagcggaaacaaggcc
ggcggcgccaagcagcacatagggaaagcgttaagttctcgggctaatactccatccgag
cagcaacaacaacaacatcatcctcatcatcaacaacaacataaagccgggacggagcga
ggctcggatcccgccgagatcaccccagcgggcagagcggcttctccggagagctgcgtg
aaggcgagtacgagcgtttcgcgtccacactcctcctcatccacatccacatccccatcc
tcctcctcctcaccatcatcttcggctaagattagcggcgtgtgcgcgcaggatggagca
acttctcccgcggttagcattagcgccgccggccgcagagcaacagcctcgggcaccgtg
gagacgccgcggcattacggtacgcggaagaagcgcggcggcgcgcggggcagcgctgcg
tcgcggagcgtgaacggcgctgcgacctcctccgtcatcagcagcaactcgccatccagc
gctggggccgcggtttccatggcgatggcgcgcgccaactcctccacgtacaccgtgtcc
agcgcgagcaggtccgttgcgctcgataaagggactcccaagatcgcgctgcaccgactc
ccgagtcacatcgtggcgagcatcgctcagggcaggaacggcacgagtgtgtcggcgctc
atccagcaggggcgcgtgaaccacggcaagaacgcagagagcgcacagagtggggaggac
cagaccaaagcagatgtgcagcaggttcagcctgggagtgtgaactcggtcccgagtgct
gtgtgcattgcagtgacgactcagcctcagtcccaacctcagtcccaacctcaaacccag
cctcagtcccaacctcaaacccaaactcagtcccaaacccaaactcagtcccaacctcaa
acccaaactcagtcccaacctcaaacccaaactcagtcccaacctcaaacccaaactcag
tcccaaacccaaactcagtcgcaacctcaaacacaaacccaaactcggtcacaacctcaa
acccaaactcagtcccaacctcaaactcaaacccaagctcaaacccaaattcagcccgta
acccaacccataacccaatctcaacctcaaaccatatcccaacctcagtcccagcctcaa
tcccaaccccgatcccaacctcaacctccgcttcaatctccatcccaactccagcctcaa
acgcaatcccagatgcagcatcaatccacacttcaacctcaaacacaatcccaacctcaa
acccagtcccaagctcagcctcagctccaacctcagcctcgacctgcagctccagcgcag
aggatcacggctccgcagctgatcgtcagaccgccacaacagcaggcgaccatccagctt
cctccaggatttaccatcccggcaggcatggtgttggtgcggacggagctgggtcagttg
atgatggttccacagcaagcactggctcaagcgcaggcccaaagtgccctctcaccccga
cccgctgcccccaccactacagccaccttcagagtcaccaccccacagagggcgcctttg
gcagtgacaacgccccagcagcaccctgcagctctggccccccaggggcccaccctggct
ccacccaccgcagctggccctgcccccggagcaaccgtcatctcccaggaaatgcaagag
aatgtgaaaaagtgtaagaacttcctggcaacgttgatcaaactcgcatcccataattcc
ccctccccggagacgtcacggaacgtgaaagcactggtgcaggaccttctggatgccaaa
atcgaaccagaagaattcaccagccggctgcagacggagctgaagtcatcaccacagcct
tacctggtgccttttctcaagaaaagcctgccagcgttgcgtttgtccctgttgaacagt
cagcagtcgctcactcagcccccgcagcctaagaccaccgcgtctccaacggtagccgtc
gccggggctgttacaatgggtaacgccccccggcaacctaacagcactgttacaccgcca
cagaatattaagagggcagggacggtaggagggcaggtccggatgcctgtggtcatcacg
cagacagtgcggccggcgggtgctgtagggaaaagtccggtggtgcaggcggggaaaagc
ccctcggcggtcagcgtgcagctctcaggggctcagaagaataaagtgaacgatcctggg
ggaggctccttcagggacgatgatgacatcaacgatgttgcgtctatggccggggtgaac
ttgagcgaggagagcgctcgtatcttagcaaccaactctgagctggtgggcacacatatc
cgctcgtgtaaagacgaggccttcctgcccacgggtctactgcatcggcgcatactggag
acggctaagaagtttggggtgacggaggttcctgtggaggcggtgaacttcatcgctcac
gccacgcagacgcggctgaggacggtgctggagaaagtgtctttcatcgctcagcacagg
atggactccagcaaggacgaggagtggtacgagcagtcgtcagacgtccgctctcagctc
aaattcttcgagcatttagagcggctggagaaacagaggaaagacgagcaggagagagag
attctcctcaaagcggccaaaagtcgctcgaggcaggaggacccagagcaggctcgtttg
aagcagaaggcaaaagagatgcagcagcaggaactggcccagatgaggcagagggacgct
aacctcacggctctcgccgccatcggaccacgcaagaaacgcagagtggactcgcccgga
gcgacatcgggcactgaggtgtcggggagctccgtgggttctccagcctcatcgttgtcg
tcctcgcgccagttccatcggcagcgaatcacgcgcgtgaacctcagggacttcatattc
tacctggagcaggagcgagagacgagccgatcgctcctgctctaccgtgctctgctgaag
tag
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integrated database retrieval system
