Ictalurus punctatus (channel catfish): 108264762
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Entry
108264762 CDS
T04658
Name
(RefSeq) C-myc promoter-binding protein isoform X1
KO
K20163
DENN domain-containing protein 4
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108264762
Membrane trafficking [BR:
ipu04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
108264762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
PPR_3
PPR
PPR_long
HSL_N
Motif
Other DBs
NCBI-GeneID:
108264762
NCBI-ProteinID:
XP_017322098
Ensembl:
ENSIPUG00000021338
UniProt:
A0A2D0QUJ9
LinkDB
All DBs
Position
4:complement(12890835..12922689)
Genome browser
AA seq
1729 aa
AA seq
DB search
MEEKSPRVADYFVVAGLTESSEPYEEHNITCDESCQRSLVQAEAPITDVAVVFRSQGEEV
PQGYTCIECTPSGLLAELNGGSIMGPQIFLCYRRGRDKPPLTDLGVLYEWREKLKPGCHI
IQTTPSGRPANISSSSSQRIYITYRRAPECHSHATLAVTDICVVIPGKGEAPPYAFCKVD
KNLNSSMWGSSVYLCYKKSLAKTNTLAFKAGLLSRYPEEDYESFPLPESVPLFCLPMGAS
IECWPSQTKYSLPVFSTFVLTGASGEKVYGAAIQFYEVYPEERLTDRQRTQLGLQASGLK
AEDSMTVHTNKSICLLSRWPFFDAFRTFLTFLYRYSISGPHTLPIEKHISHFMHKVPFPS
SQRPRILVQLSPHDSLMLSQPVSSPLPLSGGSLSTLLLNLGPKNAVTLLVLAVTEHKILV
HSLRPAVLTSVTEALVSMIFPFHWPCPYIPLCPLALADVLSAPCPFIVGVDSRYFDLYEP
PADISCVDLDTNTISHKEDRRALTWKILPRKACKRLINTLSNLHQQLVQDYLLSREEGQI
DSSMSEREPGSGKSLQSLELEIQEAFLRFMAAILKGYRSYLLPITQAPSEKATDASSLFD
LQGFLKSRDRSHQKFYFLMTKTQMFIRFIEECSFVSDKDASLAFFDDCVDKLFGTEKAGK
VDSERPEDTRLIELDKSHRSEHTVFITPPELPPVPEGEEPSMLYSYSGFPVLNAELCEPQ
EGPGTPMATSNSRHTSPGSPAAIFRRSKQEIKSAQRMAKTYSSIPHMWSKCLLRHCHGLW
FICLPGYVAACHSKVRALRAAYDVLRMMQDKKLQPPDEVCYRILMQLCGQYGQPVLAVRV
LFEMKKAGVQPNAITYGYYNRAVLESTWPSSTRGGYFLWGKLRNVVRGVVQFKQVWRRQA
SHAKDPHLSDTSDLDSVSHGSLDSTNDSAEQASIDTDFTKMDSSDDGSSTGGQSDQGYDS
LSKEEVRMGAREEQDSSPHMKEKKERDSIPLAKTSTSVKKDSSAAQRPLYLSGVRDSAVV
LKRPNSLDIFGKNTVRPGTVELTSDKLLNVTDGCEQKQTYPDEEEMEEATGTTYPRIPAT
ERRTSCTVATETIISNAHCSVARSMSFSSTLGRVPQRTGIESGFDPLSLLAAESKPGEKR
ETDDAPDTRRHLAEEIQLHMEHLSSPVSQRSLSTELRSIQSPSPHSSPRQTAVPGSPSTQ
LQPQPRSRLFSSPSLPLGCPRRSKEARPTSLASPSSPSPSASSFSMESLLTPTLDVFRSS
FMSAGKGVAEKASRLYSRLSSQTSIAQDLNSDWVSVSSLGSGEPDCSSLFEGELCPDPES
LSSPLRDASLGVTHFKRSPNRNSLCLESPSAPPRLFRQTSLLGSSLAVVKAPQTPDVCPD
ASLTPAQQNYDIEVRMSSCSRCNTCECLAYDEEIMAGWTADDSNLNSTCPFCGSAFLPLL
NVDIKDLTSRDRIPFQELPSSQTETNDASEIEEEPNSESTDRASNSASSHIEPITVPYLS
PLVLWKELESLLENEGEQAISSPAIVDHHPIVFWNLVWFFRRLELPSSLPALILSSKHCN
QNIQIDPQPLQSSASEDSKNVLVQILWDNPKLHQDPIPPCYMLWNAHCSNSNVCVSSLLE
EKQPVSLELLQSVVRSIQKNDVYQPMSQILQLLGSRLGFIRQRSLYRDILFLTLVALGKN
SINIDAFDREYKLAYDRLTPSQVKLTHNCDRPPGAGVMECRRTFGLPIL
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaaaaagcccacgtgtagcggactactttgtggtggcgggcctcactgagtcc
tcagagccctacgaagagcataacataacgtgtgatgaaagctgccagaggagcttagta
caagccgaggctccaatcacagatgtggcggtggtgtttcgctctcagggcgaggaggtg
ccgcagggctacacctgcatcgagtgcactccctcgggccttctcgctgagctgaacgga
ggtagcatcatgggcccacaaatcttcctgtgctacaggcgaggacgagacaagccgcct
ctcaccgaccttggtgtcctctatgagtggagggagaagttgaagcccggatgtcacatc
atccaaaccaccccttctggtcgccctgccaacatcagcagctcatcctcgcagagaatc
tacatcacgtaccgccgagcgcccgagtgtcattctcatgccacattggctgtcacagac
atttgtgttgttattcccggcaaaggagaagcaccaccatacgccttctgtaaagtggac
aaaaacttgaacagcagcatgtgggggtcctctgtgtacctgtgctacaaaaagtctttg
gccaaaacaaacactcttgcattcaaagcaggcctattgtcgcggtacccagaagaggac
tatgaatcgttccctttgcccgagtcagtgcccctcttctgtctgccaatgggagcatcc
atagaatgctggccctctcagacgaaatactctctccctgtgttctcgacatttgttctc
actggagcatctggagagaaggtttatggtgcagcgatacagttttatgaggtgtaccca
gaagagcgtctgactgatagacagcgcacacagctaggcctacaagccagtggcctgaag
gctgaggactccatgacggtccacaccaacaagagcatctgccttctttctcgttggccc
ttttttgatgctttccgcactttcctaaccttcctctaccgctactctatttctgggcct
cacacattgcccattgagaagcatatctctcattttatgcacaaagttcctttcccatct
tctcaaagaccacgcattttggtccagttatctccacatgatagtctcatgctgagccag
cctgtctcttctcctctgcctctgagtggtggaagtctgtcgacactgctgctaaacctg
ggtcctaaaaacgcagtgactctgctggttctggctgtgaccgaacacaagattctggtt
cattccctgcggccagctgtgctaaccagtgttaccgaggcactggtgtcaatgatcttt
cccttccactggccatgcccatacattcccctgtgcccgctggcgctggccgatgtgctc
agcgctccatgccccttcatagttggtgtggactcacgctattttgacctgtatgagcca
ccggccgatatcagttgcgtggacctggacaccaacaccatctcgcacaaagaagatcgc
cgagccctgacatggaagatcctgccaaggaaagcctgcaaacgtctgatcaataccctc
agcaatctccatcagcagctggtgcaggattatttgctgagtcgtgaggaaggtcagata
gattcatccatgagtgagagggaacctggcagtgggaagagtctccagtcgctggagcta
gagatccaagaagccttcctgcgcttcatggcagccatcttaaagggttaccgctcctac
ttacttcccatcactcaggctccctcagaaaaagcgactgatgctagctctctctttgat
ctgcaagggtttttgaagagccgtgatcgctcccatcagaagttttacttcctcatgacc
aagactcagatgttcattcgctttattgaggagtgctcctttgtcagtgataaggatgca
agcttggcattttttgatgactgtgtagacaagctctttggcacagaaaaggcaggaaag
gtggacagtgagaggccagaagacaccaggcttattgagctggacaaatcacatcgcagt
gagcacacagtgttcatcacacctccagagcttcctcctgtgcctgagggagaggagccc
tccatgctttatagctacagcggctttcccgtgctgaatgctgaactctgtgaaccccag
gagggccccggcacccctatggcaacttcaaactctagacacaccagccctgggagccca
gccgccattttccgccgctccaaacaggagataaaatcagctcagcgcatggccaagaca
tactcgtccataccccacatgtggtccaagtgtctgctgcgccactgccatggcctgtgg
ttcatctgcctgccaggctatgtagcagcgtgccactctaaggtgcgggcactccgagct
gcctacgatgtcctgaggatgatgcaggacaagaagctgcagccacctgacgaggtgtgt
taccggatcttgatgcagctctgtgggcagtacgggcaaccggtcctggctgttcgggtg
ttgtttgagatgaagaaggctggagttcagcccaatgccataacatatggatactataac
agagcggtgttggagagcacatggccttcttccactagagggggctatttcctgtggggt
aaactgcgcaatgtggtccgtggtgtggtgcagttcaaacaagtgtggaggagacaggct
agtcatgccaaagatccccatctctcagacaccagtgatctggacagcgtgagccatggc
agtctggacagcactaatgactcagcagagcaagcctctatcgatactgacttcaccaaa
atggactccagcgatgatggatccagcacaggtggacaatcagatcagggctatgactcg
ctgtctaaagaggaggtacggatgggggcaagagaagagcaggacagctctcctcacatg
aaagagaagaaagagagagacagcattccattggccaagacaagtacatctgtaaaaaag
gactcatctgctgcacagagaccactatatctttcaggtgtaagagacagtgcagttgtg
ctcaaacgtcccaactcattggacatctttggaaaaaatactgtgagacctggtacagta
gagctgacttctgataagctgctgaatgtcactgatgggtgtgaacagaagcaaacatat
ccagatgaggaggagatggaggaagcaacaggcaccacatacccacgcatacctgccaca
gagaggcgtacaagttgcacagttgccacggagactatcattagcaatgcacattgcagt
gtggcaaggagcatgagcttcagcagcactctaggccgtgtgccgcaacggacagggatc
gagtctggctttgatcccttgtcccttctagcagccgagagcaagccaggtgagaaaaga
gagacagatgatgcccctgacacacgccgtcacctggctgaggagatccagcttcacatg
gaacacctgagcagccctgttagtcaacgttcactcagcacagaactacgcagcatccag
agcccctcaccacatagctcgcctcgccagactgctgtaccaggatcaccaagcacccag
ttgcagccccagccccggagcagactattctcctcgccctcacttccactaggatgccca
cgtaggagcaaggaagcccggcccacctcattagcatcaccctcctcacccagcccttct
gcctcctcgttctccatggaatccctgctcacacccacactcgatgtattcaggagcagc
ttcatgtctgcaggcaagggtgtggctgagaaagctagccgtctctattcgaggctctcc
tcacagacttccattgcacaggacctgaattcggattgggtcagcgtgtcttcgctgggc
tcaggtgagcctgactgctcctctctgtttgagggcgaactctgtcctgacccagaaagt
ctctcctcccccctgagagatgcctctctcggcgtcactcacttcaagaggagtccaaac
aggaacagcctctgcttagagagtccttctgcacctcccaggcttttccgtcagacctcc
ctccttggatcgtcacttgcagtagtgaaagccccacaaaccccagacgtgtgtcctgat
gccagcctcacaccagcccagcagaattacgacatagaggtgcgcatgtccagttgctca
cgatgcaacacctgcgagtgcctggcatatgatgaggagatcatggctggctggacagcc
gatgactccaatttgaatagcacttgccctttctgtggctcagccttcttgcccctgctt
aatgtggacataaaagacctcaccagccgggacagaattccttttcaagagctgcctagt
tcccagacagaaacaaatgatgcttcagagatcgaagaggagccaaacagtgaatccaca
gaccgtgcctccaacagtgctagcagtcacatagagccaatcaccgtgccctacttgagt
cctctggtgctgtggaaggagctggagagcctcttggagaacgagggcgagcaggctatc
tcctcaccagccatcgtggaccaccaccccattgtcttctggaatctggtgtggtttttc
cgcaggctggagctgcccagcagcctgcccgccctcatccttagctccaagcactgcaac
cagaacattcagattgatccacagcctctccagagcagtgcctcagaggacagtaagaat
gtgttagtccagattttgtgggacaatcccaaactgcaccaggaccctatcccaccctgc
tacatgctgtggaacgcacactgttcaaactctaatgtttgtgtctcctccttgctggag
gagaaacagcctgtgagcctggagcttcttcagagtgttgttaggagcattcagaagaac
gatgtgtaccagcccatgagccagatacttcagctgcttgggtccaggctgggattcatc
aggcaacggagcctgtatagagatatcctattcttgacattggtggcattgggcaagaac
agtatcaacattgatgcttttgaccgtgagtacaagttggcgtatgatcgactgaccccc
agccaggtcaagctgacccacaactgtgaccgcccacccggtgctggggtcatggagtgt
aggaggacttttgggctgccgattctgtga
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integrated database retrieval system
