Ictalurus punctatus (channel catfish): 108265199
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Entry
108265199 CDS
T04658
Name
(RefSeq) E3 ubiquitin-protein ligase Rnf220
KO
K25174
E3 ubiquitin-protein ligase RNF220 [EC:
2.3.2.27
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108265199
Enzymes [BR:
ipu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108265199
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108265199
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNF220
zf-C3HC4_2
zf-RING_5
zf-RING_2
Pox_A_type_inc
zf-C3HC4
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
108265199
NCBI-ProteinID:
XP_053536555
UniProt:
A0A9F7R0J0
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All DBs
Position
5:33601382..33649801
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AA seq
544 aa
AA seq
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MDLHRAAFKLESSSYMPSSMSSPALMVLASTPESDRDPSIVPCQTSRPFGVPVSLEKDLH
LPFPGGSYTFSSVYQRQGGFTTRDFPASLLHLHPQFTPAPLSVLGHGAVGAFRPFSSPND
DRDPGIYHSAFLPTKRLKGGPEPETSPRLRYAVADGKEFEFGVNRLPSGSPGALKGAEDS
GKKRFSVSGLLVDTEASCSPEEQQDGCKVKCVCDVQAPVCPVCHVVLRPDELQEHVEQEM
ERLSQLHLSASPAQSECLSAGLSRPVFSVRIKREGGSCVPSPRPSEDAVHSDRYQTFLRV
RANRQTRLGARIGKMKRRKAEEEQRDGVCVVENGSVAAAGAGDEYEWSEQRRVHVVSILT
GFRGLVNTCKEQQDSDVDLDVDGDDTLSYGRAQYTETDVIPSAGDAEDGEMVVNREAASR
LSPELPRWSTAETPSTSNEDHIRPDVSVNVSPACRSCQFEMPSGDSFNTLEALKSRIRDL
EKQLTRGDRIKCLICMDSYTIPLASIQCWHVHCEECWLRTLGAKKLCPQCNTITSPGDLR
RVYL
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggacctccaccgtgccgctttcaagttggagagctcctcgtacatgccgagctccatg
tcgtctcctgccctcatggtcctggcgtcgacgcccgagtccgaccgtgacccctccatt
gtcccgtgccagacctcacgtccgttcggcgttccggtctctctggaaaaagacctgcac
ctcccgttccccggcggctcctacaccttttcctctgtgtaccagaggcagggaggcttc
acgacccgagacttccccgcctcgctgctgcacctgcacccgcagttcactccggctccg
ctgagcgtgctcggacacggcgcagtgggagcgttccggccgttctcttccccaaacgac
gacagagacccagggatttatcattccgccttcctgcccaccaagaggctgaaaggaggc
ccggagccggaaacgtcgcctcgtctgcgctacgcagtcgccgacggaaaagagttcgag
ttcggggtcaaccgacttccctccgggtctcccggtgccctaaaaggagcggaggattct
gggaaaaagcggttcagcgtgtcggggctgctggtggacaccgaggcctcgtgtagcccc
gaggaacaacaggacggatgtaaggtgaagtgtgtgtgtgatgttcaggctcctgtgtgt
cccgtctgtcacgtggtcctgcgaccggatgagctgcaggagcatgtggagcaggagatg
gagaggctatcacagctgcacctgagtgcaagtcctgcacagagtgagtgtctctcggcc
gggttatccaggcctgtgttttctgtccgcattaagcgagaaggcggatcgtgtgttccg
tcgccccgcccctccgaggacgctgtgcactcggacaggtaccagacgtttttacgagtc
cgagccaacagacaaacacgactcggcgctcgcatcgggaagatgaagaggaggaaagca
gaggaagagcagagagacggtgtgtgtgttgtggagaacggctctgtggcagcagcagga
gcaggagacgagtatgagtggagtgaacagaggagggtgcacgtggtgtcgattctgacc
ggattcagaggtttagtaaacacgtgtaaggagcagcaggacagtgacgtggatttggac
gtggacggagacgatactctgagttacggccgcgcgcaatacacggagacggacgtgatc
ccgagcgcaggagacgctgaggacggcgagatggtcgtaaacagggaagcggcgagtcga
ctctctccagaactccccaggtggtccacagcagaaactccatctacgagtaatgaagac
cacatcaggccagatgtcagcgtgaacgtctctccagcctgcaggagctgtcagtttgag
atgccgtccggtgactcttttaacacactggaagcgttgaagtcacggatccgagacctg
gagaagcagctgactcgaggagaccggatcaaatgtcttatctgcatggactcgtatacg
ataccgctggcttccatccagtgttggcacgtgcactgtgaggagtgctggctccggacg
ctgggagcgaagaagctgtgtcctcagtgcaacaccatcacgtccccgggtgacctgcgg
cgtgtgtatctgtga
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