Ictalurus punctatus (channel catfish): 108265244
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Entry
108265244 CDS
T04658
Name
(RefSeq) DNA polymerase beta
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
108265244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108265244
Enzymes [BR:
ipu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
108265244
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
108265244
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
108265244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
HHH_8
DNA_pol_B_thumb
DNA_pol_lambd_f
HHH_5
NTP_transf_2
HHH_2
Cdd1
Motif
Other DBs
NCBI-GeneID:
108265244
NCBI-ProteinID:
XP_017322876
Ensembl:
ENSIPUG00000024873
UniProt:
W5UI78
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All DBs
Position
5:complement(14469496..14483481)
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AA seq
336 aa
AA seq
DB search
MSKRKAPQETLNEGITDFLIELANYEKNVNRATHKYNAYRKAASVIAKYPNKIKSGNEAK
KLDGVGAKIAEKIDEYLTTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFYDEGVK
TLDDLKKIEHKLNHHQQIGLKYFEEFEKRIPRSEMEKMEALILQELGQLDPDYIGTICGS
YRRGAQSSGDIDILLTHPDFTSQSQKQPWLLHAVLEHLESIGFVTDTLSKGDTKFMGVCQ
LKRGVKDEKDYDHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTIR
PLGVTGVPGEPLLVDSEKDIFDYIHMKYREPKERSE
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaacggaaagcaccgcaagaaactttaaacgagggaatcacggactttcttatt
gaattggccaattatgaaaaaaatgtaaatcgggctacccataagtacaatgcatacaga
aaagctgcttctgtgattgctaagtacccaaataaaatcaagagtggcaatgaagccaag
aaactggatggggttggtgcaaagattgctgaaaaaattgatgagtatttaaccacaggg
aaactccgcaaactggaaaagattcgcaatgatgacaccagctcctctatcaacttttta
actagagtgactggaataggcccagctgcagctaggaagttctatgatgaaggtgtcaag
accctagatgatctaaagaagattgaacataagctgaaccatcatcagcagattggcctt
aaatattttgaagaatttgagaagagaattccccgctcagagatggagaaaatggaggct
ttaatattacaagagttggggcagctcgacccggattacattggcaccatctgtggcagc
tacagacgaggtgcacagtcgagtggtgatattgatatactgctgactcatccagacttt
acctcccaatctcaaaaacaaccctggctgctccatgcagtgttggagcaccttgagtct
attggctttgtcactgatactttgtccaaaggagatacaaagttcatgggtgtatgccag
ctgaaaagaggagtcaaggatgagaaggattatgatcatcgccgtattgatatcaggctt
attcctaaggatcagtattactgtggtgtgctctacttcactgggagtgatatattcaat
aagaatatgagaacccatgcgcttgagaaaggcttcacccttaatgagtacactattcgt
ccactaggagtaactggtgtgcctggagagcccttactggtggacagtgagaaggacatt
tttgactacatccacatgaaatacagagagccaaaagaacgcagtgaatga
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