Ictalurus punctatus (channel catfish): 108265330
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Entry
108265330 CDS
T04658
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108265330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108265330
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108265330
mRNA degradation factors
5'-3' decay
Lsm complex
108265330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
108265330
NCBI-ProteinID:
XP_017323022
Ensembl:
ENSIPUG00000002312
UniProt:
W5U936
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All DBs
Position
5:1189824..1192937
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AA seq
133 aa
AA seq
DB search
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGILRSIDQFANLVLHQTVERIHVGKKFGDIP
RGIFVVRGENVVLLGEVDLDKDCDQILQRVSIEEILEEQRVEQQAKQESERLKLQAVKER
GLSMPKADTLDDF
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaattacatgccggggacagccagcctcattgaggacatcgacaaaaagcacctggtt
ctgctgagagatgggagaacactgatcgggatcctcaggagcatagatcagttcgccaac
ctggttctgcaccaaacggtggaacggatccacgtgggtaaaaaattcggagacatcccc
cgagggatcttcgtggtccgaggggaaaatgtggtcctgctgggagaagtagatctggat
aaagactgcgatcagatcctgcagagagtctccatcgaggagatcctggaggagcagcgg
gtggagcagcaggccaagcaggagtcggagcggctgaagctgcaggcggtgaaggagcga
ggcttgtccatgcccaaagccgacacgctcgacgacttctga
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