Ictalurus punctatus (channel catfish): 108265404
Help
Entry
108265404 CDS
T04658
Symbol
pabpc1l
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108265404 (pabpc1l)
09123 Folding, sorting and degradation
03018 RNA degradation
108265404 (pabpc1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108265404 (pabpc1l)
03041 Spliceosome [BR:
ipu03041
]
108265404 (pabpc1l)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108265404 (pabpc1l)
mRNA cycle factors
Stress granule specific factors
108265404 (pabpc1l)
Spliceosome [BR:
ipu03041
]
Complex C
Other components
Complex C specific factors
108265404 (pabpc1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RBD_RDR6
Motif
Other DBs
NCBI-GeneID:
108265404
NCBI-ProteinID:
XP_017323168
Ensembl:
ENSIPUG00000012602
UniProt:
A0A2D0QXN3
LinkDB
All DBs
Position
5:complement(6594884..6610643)
Genome browser
AA seq
624 aa
AA seq
DB search
MNSSGPVYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINYQ
QPADAECALDTMNYEVIKGRPIRIMWSQRDPCLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAKRAIETMNGMLLNDRKVFVGHFKSRKERE
AEFGAKAMEFTNVYIKNFGDDFDNEKLRNIFSEFGKTLSVRVMTDEKGRSRGFGFVNYEN
HEDAQKAVAEMNGKELNGRVLYVGRAQKRLERQSELKRRFEQIKQERLNRYQGVNLYVKN
LDDGIDDDKLRKEFAPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLASVRAIPGPAMPTYQQSSGYYMPSIPQPQGRAFY
STVPNLRPAPRFAAQAPRPQAPYSAQTMRPAMPRRTSTPISTVRQASTQAPGVNTQRMAH
IGTQTAGGRTVGGPMVRGVSQYKYSSGVRNVQQVITVPTSIPQQMVPSAVMEPAVHIKGQ
EPLTPSMLAAAPLLEQKQLLGERLYPLIHALHPNLAGKITGMLLEIDNSELLLMLESPES
LQTKVEEAVAVLQAHQAKEASPKK
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagtgggccggtgtaccctttggcctcgctctatgtgggcgacttgcatcct
gatgtcacggaggccatgctatatcaaaagttctcccctgcaggacccatcatgtccatc
cgcgtgtgccgggatatcatcacccgcaggtccctcggttatgcctacatcaattatcag
cagcctgctgacgctgaatgtgctctggacacgatgaactatgaagtgataaagggtcgt
cccatcaggatcatgtggtcgcagcgagacccttgtctgaggaagtctggagtggggaac
atcttcatcaagaacatggacgagtcgatcgacaacaaggcgctttatgacaccttctct
gcctttggcaacattttgtcatgtaaggtggtatgtgacgaaaatggctcgaaaggttat
ggatttgtgcactttgagacacaggaggcagcgaagcgagccattgaaaccatgaacggc
atgctcctgaatgatcgcaaagtttttgtcggacattttaaatctcgtaaagagcgggag
gcagagtttggcgcaaaggccatggagttcaccaatgtttacatcaagaactttggagac
gattttgacaatgagaagctacgcaatatcttctctgaatttggtaagaccctgagtgtc
cgtgtgatgactgatgaaaaggggcgttctcgtggctttggctttgtgaactatgaaaac
cacgaggatgcacagaaggcagtagctgagatgaacggaaaggaattgaacggacgagtt
ctgtatgtgggccgtgctcagaagagactggagagacagtccgaactcaaacgcaggttc
gagcaaatcaagcaagaacgcttaaaccgataccagggggtgaatctgtacgtgaagaat
ctggatgacggtattgatgatgacaaactgagaaaagagtttgccccctatggcatgatt
accagtgctaaggtgatgactgagggaggtcacagtaaaggctttggcttcgtttgtttc
tcctctcctgaggaggccactaaagctgtgaccgagatgaatggccggatcgtcagcact
aagcctctgtatgtggccctggcccaaaggaaagaggagcgcaaggccatactcaccaac
cagtacatgcagagactggccagcgtgagagccattcctggccctgccatgcctacttac
cagcagagttctggctactacatgccttctatacctcagcctcagggacgtgccttctac
agcactgtaccaaatctacgaccagcaccacgctttgctgcccaagccccaagaccacag
gctccttactcggctcagacaatgagaccagcaatgccacgcaggacctccacccccatc
agcactgtgcgccaagcctccacccaggctccaggtgtgaacacccagagaatggcgcac
atcgggactcagacagcaggtgggcgaactgtgggagggcctatggtgaggggcgtctct
caatacaaatactcaagcggggttcgaaatgttcaacaggtcatcactgtaccaacttct
attccacagcagatggtgccttctgcagttatggagcctgcagttcatataaaaggtcaa
gagccccttactccatcaatgttggcagccgcaccccttttggagcagaaacaactactg
ggtgaacgtctgtatccactgatccatgccctgcatccgaacctcgcaggcaagatcact
ggcatgctgctcgaaatagataattctgaacttctactcatgttagagtctccagagtca
ctgcaaaccaaggttgaggaggcagtggctgttcttcaagctcatcaagcaaaggaagcc
tcacctaagaaatag
DBGET
integrated database retrieval system
