Ictalurus punctatus (channel catfish): 108265419
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Entry
108265419 CDS
T04658
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) lyase 2
KO
K10772
AP endonuclease 2 [EC:
3.1.11.2
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108265419
Enzymes [BR:
ipu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
108265419
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
108265419
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Zn_ribbon_GRF
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
108265419
NCBI-ProteinID:
XP_017323193
Ensembl:
ENSIPUG00000000352
UniProt:
W5UIJ6
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All DBs
Position
5:complement(20752848..20756426)
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AA seq
583 aa
AA seq
DB search
MKIVTWNINGIRTFKNGIKSALDSFDADIICVQETKVTRDLLDERTAIVDGYNSYFSFSR
GRTGYSGVATFCKDSATPFAAEEGLTGRLVNHGEAVGCYGDQGDFSIEELQSLDNEGRAV
ITQHKFKHSLEAEGSETLTVINVYCPRADPEKPERKLFKLQFYKLLQSRAEAIVGPRSHV
IILGDINTSHQPIDHCDPDDVENFEDNPGRKWLDSFLFEPAENGNDEEEGSEPSLNCVSG
GKFIDTFRYFHPTRSNAFTCWSTRTGARQTNYGTRIDYIFANRLLVETNLLNADIMPEVE
GSDHCPIWAKLSCTFVPSPRCPALCTCYMPEFMGKQQKLLRFLVKVSGQHTDGRDIEKPL
PGSQEVGEICENLNPLAAGVSSGSKRPSDGLPESSTFKGKKSKQAKKATKPQGNLLTFFK
PKLTPVVSSSQSLSSGENTETGFKSEEVMPEIHEGTENVNSCIATHSMLTEGHTEVKVKG
ETNNFSISKTKEDEERCQDQLQSSTMLNQETKKGSCPDFWKSVLHGPPQPPRCNAHDELC
VLRTVKKPGPNLGRQFFVCARPQGHSSNPQARCNFFAWVDKRK
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgaagattgtcacttggaacataaatggcataagaacctttaaaaacgggataaagtct
gcgcttgactcgttcgacgctgatataatatgcgttcaggaaaccaaagtgacgcgcgat
ctgctggacgaaaggacagcaattgtggatggatacaactcttatttcagctttagccga
ggacgcactggctactcgggggtcgcgacgttttgtaaagactccgctaccccattcgcc
gcagaagaaggactgacaggtcgccttgtcaaccatggagaggctgtcggttgctatggt
gatcagggggacttctccatagaggagctccagtcacttgataatgaaggacgagccgta
atcacccaacacaagttcaagcattcgctggaagcagaaggatctgagaccctgactgtc
atcaatgtgtattgcccacgtgcagatccagaaaagccagagagaaagctttttaaactg
cagttttacaaactcttacaaagcagagctgaggcaattgtgggacctcgaagtcatgtg
atcatattgggtgatataaacacctctcaccagccaatagaccactgtgacccagatgat
gtggagaactttgaggacaatccaggcagaaagtggttggacagcttcctgtttgagccg
gcagaaaacgggaatgatgaggaggaaggttctgagccctctctgaattgtgtgtctggt
ggtaaatttattgacaccttccgctatttccatcctacacgtagcaatgccttcacatgc
tggtctacacgtacgggtgcgaggcaaaccaactatggcacccgcatcgactatattttt
gccaatcgtttactagttgagacaaacttactgaatgcagatatcatgccagaagtggag
ggttctgatcactgtcccatatgggctaaactaagttgtacttttgtacccagtcctaga
tgcccagctctgtgcacctgttatatgcctgagttcatggggaagcagcagaaactcttg
cgctttcttgttaaggtttctggacaacacacagatggcagagacattgaaaaacctttg
cctggatctcaagaggttggggagatttgtgagaacctcaatcctctagcagcaggtgtc
agttctgggagcaagagaccttcagatggattaccagagtcatctacattcaaggggaaa
aaaagcaaacaagctaaaaaggcaactaaacctcaaggcaatctcctgaccttctttaaa
cctaaactgacccctgtggtatcttcaagccagagcttaagctcaggtgagaacaccgag
acaggtttcaagagtgaggaagtcatgcctgagatccacgaaggtacagaaaatgtcaac
agctgcatagcaacccacagtatgcttacagagggccacactgaggtgaaagtgaagggt
gaaacaaataacttcagcatctcaaagactaaggaagacgaagagcgttgtcaggatcag
ctccaaagcagcaccatgctcaaccaggagaccaagaaaggatcctgtccagacttttgg
aaatcagttttgcatggaccaccccagccgccacggtgtaacgcgcacgacgaattgtgc
gtgctgcggactgtgaagaaacctggaccaaatttgggccgtcagttttttgtatgtgct
cgtcctcagggccactcgtccaacccacaggcaaggtgtaatttctttgcctgggtggac
aaacgcaaatag
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